Expected pairwise congruence among gene trees under the coalescent model.
Sign Up to like & getrecommendations! Published in 2017 at "Molecular phylogenetics and evolution"
DOI: 10.1016/j.ympev.2016.09.023
Abstract: Although it is widely appreciated that gene trees may differ from the overall species tree and from one another due to various evolutionary processes (e.g., incomplete lineage sorting (ILS), horizontal gene transfer, etc.), the extent… read more here.
Keywords: species tree; coalescent model; expected pairwise; gene ... See more keywords
A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
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DOI: 10.1093/molbev/msz296
Abstract: Abstract Recent analyses suggest that cross-species gene flow or introgression is common in nature, especially during species divergences. Genomic sequence data can be used to infer introgression events and to estimate the timing and intensity… read more here.
Keywords: genomic sequence; sequence data; introgression; coalescent model ... See more keywords
A simulation study to examine the impact of recombination on phylogenomic inferences under the multispecies coalescent model
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Ecology"
DOI: 10.1111/mec.16433
Abstract: Phylogenomic analyses under the multispecies coalescent model assume no recombination within locus and free recombination among loci. Yet, in real data sets intralocus recombination causes different sites of the same locus to have different genealogical… read more here.
Keywords: recombination; impact recombination; coalescent model; multispecies coalescent ... See more keywords
Rooting phylogenetic trees under the coalescent model using site pattern probabilities
Sign Up to like & getrecommendations! Published in 2017 at "BMC Evolutionary Biology"
DOI: 10.1186/s12862-017-1108-7
Abstract: BackgroundPhylogenetic tree inference is a fundamental tool to estimate ancestor-descendant relationships among different species. In phylogenetic studies, identification of the root - the most recent common ancestor of all sampled organisms - is essential for… read more here.
Keywords: pattern probabilities; method; model; using site ... See more keywords