Complete title: Codon bias analysis may be insufficient for identifying host(s) of a novel virus
Sign Up to like & getrecommendations! Published in 2020 at "Journal of Medical Virology"
DOI: 10.1002/jmv.25977
Abstract: Abstract A novel kind of coronavirus has infected more than 1, 600, 000 people, claimed over 100, 000 lives, and spread to 212 countries and territories since December 2019.1 The virus has been named SARS‐CoV‐2… read more here.
Keywords: bias analysis; complete title; codon bias; title codon ... See more keywords
Essentiality, conservation, evolutionary pressure and codon bias in bacterial genomes.
Sign Up to like & getrecommendations! Published in 2018 at "Gene"
DOI: 10.1016/j.gene.2018.04.017
Abstract: Essential genes constitute the core of genes which cannot be mutated too much nor lost along the evolutionary history of a species. Natural selection is expected to be stricter on essential genes and on conserved… read more here.
Keywords: essential genes; essentiality conservation; codon bias; conservation ... See more keywords
Codon stabilization coefficient as a metric to gain insights into mRNA stability and codon bias and their relationships with translation
Sign Up to like & getrecommendations! Published in 2019 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkz033
Abstract: Abstract The codon stabilization coefficient (CSC) is derived from the correlation between each codon frequency in transcripts and mRNA half-life experimental data. In this work, we used this metric as a reference to compare previously… read more here.
Keywords: mrna stability; codon stabilization; codon bias; stability codon ... See more keywords
The analysis of genome composition and codon bias reveals distinctive patterns between avian and mammalian circoviruses which suggest a potential recombinant origin for Porcine circovirus 3
Sign Up to like & getrecommendations! Published in 2018 at "PLoS ONE"
DOI: 10.1371/journal.pone.0199950
Abstract: Members of the genus Circovirus are host-specific viruses, which are totally dependent on cell machinery for their replication. Consequently, certain mimicry of the host genome features is expected to maximize cellular replicative system exploitation and… read more here.
Keywords: codon bias; composition; composition codon; mammalian circoviruses ... See more keywords
Codon bias confers stability to human mRNAs
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DOI: 10.15252/embr.201948220
Abstract: Codon bias has been implicated as one of the major factors contributing to mRNA stability in several model organisms. However, the molecular mechanisms of codon bias on mRNA stability remain unclear in humans. Here, we… read more here.
Keywords: bias; codon bias; confers stability; bias confers ... See more keywords
Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2023.1170790
Abstract: Introduction Codon usage bias is a prevalent phenomenon observed across various species and genes. However, the specific attributes of codon usage in the mitochondrial genome of Ganoderma species remain unknown. Methods In this study, we… read more here.
Keywords: codon usage; codon; analysis; codon bias ... See more keywords