Searching and inferring colorful topological motifs in vertex-colored graphs
Sign Up to like & getrecommendations! Published in 2020 at "Journal of Combinatorial Optimization"
DOI: 10.1007/s10878-020-00590-4
Abstract: The analysis of biological networks allows the understanding of many biological processes, including the structure, function, interaction and evolutionary relationships of their components. One of the most important concepts in biological network analysis is that… read more here.
Keywords: network; colorful topological; colored graphs; topological motifs ... See more keywords
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs
Sign Up to like & getrecommendations! Published in 2021 at "PLoS Computational Biology"
DOI: 10.1371/journal.pcbi.1008990
Abstract: RNA tertiary structure is crucial to its many non-coding molecular functions. RNA architecture is shaped by its secondary structure composed of stems, stacked canonical base pairs, enclosing loops. While stems are precisely captured by free-energy… read more here.
Keywords: colored graphs; base pairs; recurrent rna; structure ... See more keywords