BASE: A novel workflow to integrate nonubiquitous genes in comparative genomics analyses for selection
Sign Up to like & getrecommendations! Published in 2021 at "Ecology and Evolution"
DOI: 10.1002/ece3.7959
Abstract: Abstract Inferring the selective forces that orthologous genes underwent across different lineages can help us understand the evolutionary processes that have shaped their extant diversity and the phenotypes they underlie. The most widespread metric to… read more here.
Keywords: comparative genomics; selection regimes; base novel; selection ... See more keywords
Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1
Sign Up to like & getrecommendations! Published in 2018 at "Molecular Genetics and Genomics"
DOI: 10.1007/s00438-018-1514-6
Abstract: Vibriocholerae, which is autochthonous to estuaries worldwide, can cause human cholera that is still pandemic in developing countries. A number of V. cholerae isolates of clinical and environmental origin worldwide have been subjected to genome… read more here.
Keywords: comparative genomics; non o139; cholerae isolates; yangtze river ... See more keywords
Antibiotics from Haloarchaea: What Can We Learn from Comparative Genomics?
Sign Up to like & getrecommendations! Published in 2020 at "Marine Biotechnology"
DOI: 10.1007/s10126-020-09952-9
Abstract: The knowledge of antibiotics produced by Archaea (archaeocins) is still limited. So far, only two types of archaeocins are known: (i) sulfolobicins, produced by the extremely thermophilic Sulfolobus spp. and (ii) haloarcheocins, produced by halophilic… read more here.
Keywords: comparative genomics; knowledge; learn comparative; haloarchaea learn ... See more keywords
Comparative genomics of 40 edible and medicinal mushrooms provide an insight into the evolution of lignocellulose decomposition mechanisms
Sign Up to like & getrecommendations! Published in 2019 at "3 Biotech"
DOI: 10.1007/s13205-019-1689-5
Abstract: Diversity comparison and phylogenetic analyses of carbohydrate-active enzymes (CAZymes), auxiliary activities (AAs) and cytochromes P450 among 40 fungi, which are based on different nutritional pathways, help clarify and explain their divergence and improvement of various… read more here.
Keywords: comparative genomics; gene families; evolution; lignocellulose decomposition ... See more keywords
Comparative genomics and proteomic analyses between lethal and nonlethal strains of Plasmodium berghei.
Sign Up to like & getrecommendations! Published in 2018 at "Experimental parasitology"
DOI: 10.1016/j.exppara.2018.01.001
Abstract: Plasmodium berghei (Pb) XAT, a rodent malaria parasite, is an irradiation-attenuated variant derived from the lethal strain Pb NK65. Differences in genome sequence, protein structure and function between Pb XAT and Pb NK65 are currently… read more here.
Keywords: comparative genomics; deficient; rap2; infection ... See more keywords
Comparative genomics reveals environmental adaptation differences between Cronobacter species.
Sign Up to like & getrecommendations! Published in 2021 at "Food research international"
DOI: 10.1016/j.foodres.2021.110541
Abstract: The genus Cronobacter is an opportunistic food-borne pathogen which is able to adapt to diverse environments and shows considerable genetic diversity. Genomic analysis can be used to reveal the variation across the genus with respect… read more here.
Keywords: environmental adaptation; comparative genomics; reveals environmental; cronobacter ... See more keywords
Comparative genomics and in silico gene evaluation involved in the probiotic potential of Bifidobacterium longum 51A.
Sign Up to like & getrecommendations! Published in 2021 at "Gene"
DOI: 10.1016/j.gene.2021.145781
Abstract: The Bifidobacterium longum 51A strain of isolated from feces of a healthy child, has demon- strated probiotic properties by in vivo and in vitro studies, wich may be assigned to its production of metabolites such… read more here.
Keywords: comparative genomics; production; longum 51a; bifidobacterium longum ... See more keywords
A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of biotechnology"
DOI: 10.1016/j.jbiotec.2017.07.010
Abstract: The rapid development of next generation sequencing technology has greatly increased the amount of available microbial genomes. As a result of this development, there is a rising demand for fast and automated approaches in analyzing… read more here.
Keywords: comparative genomics; platforms comparative; genomics recent; bioinformatics platforms ... See more keywords
Comparative genomics and proposal of Streptomyces radicis sp. nov., an endophytic actinomycete from roots of plants in Thailand.
Sign Up to like & getrecommendations! Published in 2021 at "Microbiological research"
DOI: 10.1016/j.micres.2021.126889
Abstract: Strains DS1-2T and AZ1-7, which were isolated from roots of plants, were taxonomically characterized based on polyphasic taxonomic and taxogenomic approaches. Both strains were Gram-stain-positive and filamentous bacteria which contained LL-diaminopimelic acid in cell-wall peptidoglycan… read more here.
Keywords: comparative genomics; radicis nov; strains ds1; streptomyces radicis ... See more keywords
A comparative genomics methodology reveals a widespread family of membrane-disrupting T6SS effectors
Sign Up to like & getrecommendations! Published in 2020 at "Nature Communications"
DOI: 10.1038/s41467-020-14951-4
Abstract: Gram-negative bacteria deliver effectors via the type VI secretion system (T6SS) to outcompete their rivals. Each bacterial strain carries a different arsenal of effectors; the identities of many remain unknown. Here, we present an approach… read more here.
Keywords: comparative genomics; methodology; t6ss effectors; family ... See more keywords
Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/s41598-017-03489-z
Abstract: Escherichia coli that are capable of causing human disease are often classified into pathogenic variants (pathovars) based on their virulence gene content. However, disease-associated hybrid E. coli, containing unique combinations of multiple canonical virulence factors… read more here.
Keywords: comparative genomics; escherichia coli; virulence; enterotoxigenic coli ... See more keywords