A priori estimation of sequencing effort in complex microbial metatranscriptomes
Sign Up to like & getrecommendations! Published in 2020 at "Ecology and Evolution"
DOI: 10.1002/ece3.6941
Abstract: Abstract Metatranscriptome analysis or the analysis of the expression profiles of whole microbial communities has the additional challenge of dealing with a complex system with dozens of different organisms expressing genes simultaneously. An underlying issue… read more here.
Keywords: estimation sequencing; effort complex; priori estimation; sequencing effort ... See more keywords
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Sign Up to like & getrecommendations! Published in 2022 at "Nature Biotechnology"
DOI: 10.1038/s41587-021-01130-z
Abstract: Microbial communities might include distinct lineages of closely related organisms that complicate metagenomic assembly and prevent the generation of complete metagenome-assembled genomes (MAGs). Here we show that deep sequencing using long (HiFi) reads combined with… read more here.
Keywords: closely related; metagenome assembled; complete metagenome; microbial communities ... See more keywords
An equation‐free method reveals the ecological interaction networks within complex microbial ecosystems
Sign Up to like & getrecommendations! Published in 2017 at "Methods in Ecology and Evolution"
DOI: 10.1111/2041-210x.12814
Abstract: 1.Mapping the network of ecological interactions is key to understanding the composition, stability, function and dynamics of microbial communities. In recent years various approaches have been used to reveal microbial interaction networks from metagenomic sequencing… read more here.
Keywords: interaction networks; ssm; interaction; ecological interaction ... See more keywords