Magneto-Driven Gradients of Diamagnetic Objects for Engineering Complex Tissues.
Sign Up to like & getrecommendations! Published in 2020 at "Advanced materials"
DOI: 10.1002/adma.202005030
Abstract: Engineering complex tissues represents an extraordinary challenge and, to date, there have been few strategies developed that can easily recapitulate native-like cell and biofactor gradients in 3D materials. This is true despite the fact that… read more here.
Keywords: magneto driven; complex tissues; engineering complex; diamagnetic objects ... See more keywords
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa205
Abstract: SUMMARY We develop a fully unsupervised deconvolution method to dissect complex tissues into molecularly distinctive tissue or cell subtypes based on bulk expression profiles. We implement an R package, deconvolution by Convex Analysis of Mixtures… read more here.
Keywords: package; complex tissues; fully unsupervised; tissue ... See more keywords
dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues
Sign Up to like & getrecommendations! Published in 2020 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkaa312
Abstract: Abstract Multiplex single-molecule fluorescent in situ hybridization (smFISH) is a powerful method for validating RNA sequencing and emerging spatial transcriptomic data, but quantification remains a computational challenge. We present a framework for generating and analyzing… read more here.
Keywords: fluorescent situ; single molecule; multiplex single; complex tissues ... See more keywords
BlenderPhotonics: an integrated open-source software environment for three-dimensional meshing and photon simulations in complex tissues
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Biomedical Optics"
DOI: 10.1117/1.jbo.27.8.083014
Abstract: Abstract. Significance: Rapid advances in biophotonics techniques require quantitative, model-based computational approaches to obtain functional and structural information from increasingly complex and multiscaled anatomies. The lack of efficient tools to accurately model tissue structures and… read more here.
Keywords: open source; source; software; three dimensional ... See more keywords