Comprehensive Database of Carotenoid Contents in Ibero-American Foods. A Valuable Tool in the Context of Functional Foods and the Establishment of Recommended Intakes of Bioactives.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of agricultural and food chemistry"
DOI: 10.1021/acs.jafc.7b06148
Abstract: Foods that are commonly consumed in the diet are considered to provide more than 40 different carotenoids. However, the content in carotenoids varies considerably in both qualitative and quantitative terms as a consequence of different… read more here.
Keywords: american foods; database carotenoid; ibero american; carotenoid contents ... See more keywords
TRlnc: a comprehensive database for human transcriptional regulatory information of lncRNAs
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbaa011
Abstract: Long noncoding RNAs (lncRNAs) have been proven to play important roles in transcriptional processes and biological functions. With the increasing study of human diseases and biological processes, information in human H3K27ac ChIP-seq, ATAC-seq and DNase-seq… read more here.
Keywords: information; database human; trlnc; lncrnas ... See more keywords
KNIndex: a comprehensive database of physicochemical properties for k-tuple nucleotides
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbaa284
Abstract: With the development of high-throughput sequencing technology, the genomic sequences increased exponentially over the last decade. In order to decode these new genomic data, machine learning methods were introduced for genome annotation and analysis. Due… read more here.
Keywords: dna; physicochemical properties; tuple nucleotides; properties tuple ... See more keywords
sInterBase: a comprehensive database of Escherichia coli sRNA–mRNA interactions
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DOI: 10.1093/bioinformatics/btad172
Abstract: Abstract Summary sInterBase is a comprehensive and easy-to-operate web-based platform for mining experimentally identified sRNA–mRNA interactions in Escherichia coli. Interactions in the database are annotated with an interaction duplex and a set of descriptive features.… read more here.
Keywords: sinterbase comprehensive; escherichia coli; srna mrna; mrna interactions ... See more keywords
CompoDynamics: a comprehensive database for characterizing sequence composition dynamics.
Sign Up to like & getrecommendations! Published in 2021 at "Nucleic acids research"
DOI: 10.1093/nar/gkab979
Abstract: Sequence compositions of nucleic acids and proteins have significant impact on gene expression, RNA stability, translation efficiency, RNA/protein structure and molecular function, and are associated with genome evolution and adaptation across all kingdoms of life.… read more here.
Keywords: sequence compositions; composition dynamics; sequence composition; comprehensive database ... See more keywords
IntroVerse: a comprehensive database of introns across human tissues
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac1056
Abstract: Abstract Dysregulation of RNA splicing contributes to both rare and complex diseases. RNA-sequencing data from human tissues has shown that this process can be inaccurate, resulting in the presence of novel introns detected at low… read more here.
Keywords: introns across; introverse comprehensive; database introns; introverse ... See more keywords
AmyloGraph: a comprehensive database of amyloid–amyloid interactions
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DOI: 10.1093/nar/gkac882
Abstract: Abstract Information about the impact of interactions between amyloid proteins on their fibrillization propensity is scattered among many experimental articles and presented in unstructured form. We manually curated information located in almost 200 publications (selected… read more here.
Keywords: amylograph comprehensive; amyloid; amyloid interactions; amyloid amyloid ... See more keywords
Lineage Landscape: a comprehensive database that records lineage commitment across species
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac951
Abstract: Abstract Commitment to specific cell lineages is critical for mammalian embryonic development. Lineage determination, differentiation, maintenance, and organogenesis result in diverse life forms composed of multiple cell types. To understand the formation and maintenance of… read more here.
Keywords: lineage landscape; across species; comprehensive database; lineage ... See more keywords
Comprehensive Database and Machine Learning Put Focus on Gut Microbiome
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Pulse"
DOI: 10.1109/mpuls.2022.3209126
Abstract: A technology company in Gaithersburg, MD, USA, has developed a three-pronged approach to help researchers analyze microbiome samples. It includes a thorough microbiome database, an algorithm to search it, and a cloud platform to return… read more here.
Keywords: database; machine learning; learning put; microbiome ... See more keywords
SEQdata-BEACON: a comprehensive database of sequencing performance and statistical tools for performance evaluation and yield simulation in BGISEQ-500
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DOI: 10.1186/s13040-019-0209-9
Abstract: BackgroundThe sequencing platform BGISEQ-500 is based on DNBSEQ technology and provides high throughput with low costs. This sequencer has been widely used in various areas of scientific and clinical research. A better understanding of the… read more here.
Keywords: yield; bgiseq 500; performance; comprehensive database ... See more keywords
A Comprehensive Database for DNA Adductomics
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Chemistry"
DOI: 10.3389/fchem.2022.908572
Abstract: The exposure of human DNA to genotoxic compounds induces the formation of covalent DNA adducts, which may contribute to the initiation of carcinogenesis. Liquid chromatography (LC) coupled with high-resolution mass spectrometry (HRMS) is a powerful… read more here.
Keywords: dna; step; dna adducts; comprehensive database ... See more keywords