Comparative Analysis of Core and Accessory Genes in Coexpression Network.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1099-2_3
Abstract: Prokaryotes harbor a various proportion of accessory genes in their genomes. The integration of accessory functions with the core regulation network is critical for environmental adaptation, particularly considering a theoretically unlimited number of niches on… read more here.
Keywords: comparative analysis; network; core accessory; accessory genes ... See more keywords
CELEBRIMBOR: core and accessory genes from metagenomes
Sign Up to like & getrecommendations! Published in 2024 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btae542
Abstract: Abstract Motivation Metagenome-Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) are often incomplete, with sequences missing due to errors in assembly or low coverage. This presents a particular challenge for the identification of true gene… read more here.
Keywords: accessory genes; core accessory; celebrimbor core; genes metagenomes ... See more keywords
Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers a common chromosomal hotspot for optrA acquisition within a diversity of core and accessory genomes
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DOI: 10.1099/mgen.0.000350
Abstract: Linezolid-resistant Enterococcus faecalis (LREfs) carrying optrA are increasingly reported globally from multiple sources, but we lack a comprehensive analysis of human and animal optrA-LREfs strains. To assess if optrA is dispersed in isolates with varied… read more here.
Keywords: hotspot optra; accessory genomes; core accessory; chromosomal hotspot ... See more keywords