Microbiome-environment interactions in antimony-contaminated rice paddies and the correlation of core microbiome with arsenic and antimony contamination.
Sign Up to like & getrecommendations! Published in 2021 at "Chemosphere"
DOI: 10.1016/j.chemosphere.2020.128227
Abstract: Mining activities of antimony (Sb) and arsenic (As) typically result in severe environmental contamination. These contaminants accumulate in rice and thus threaten the health of local residents, who consume Sb- and As-enriched rice grains. Microorganisms… read more here.
Keywords: rice; contamination; microbiome environment; environment interactions ... See more keywords
A Synthetic Microbial Community of Plant Core Microbiome Can Be a Potential Biocontrol Tool.
Sign Up to like & getrecommendations! Published in 2023 at "Journal of agricultural and food chemistry"
DOI: 10.1021/acs.jafc.2c08017
Abstract: Microbes are accepted as the foremost drivers of the rhizosphere ecology that influences plant health in direct or indirect ways. In recent years, the rapid development of gene sequencing technology has greatly facilitated the study… read more here.
Keywords: microbial community; core microbiome; synthetic microbial; plant core ... See more keywords
Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater
Sign Up to like & getrecommendations! Published in 2021 at "Nature Communications"
DOI: 10.1038/s41467-021-24549-z
Abstract: While oligotrophic deep groundwaters host active microbes attuned to the low-end of the bioenergetics spectrum, the ecological constraints on microbial niches in these ecosystems and their consequences for microbiome convergence are unknown. Here, we provide… read more here.
Keywords: biological interactions; groundwater; core microbiome; energy efficiency ... See more keywords
Comprehensive functional core microbiome comparison in genetically obese and lean hosts under the same environment
Sign Up to like & getrecommendations! Published in 2021 at "Communications Biology"
DOI: 10.1038/s42003-021-02784-w
Abstract: Our study provides an exhaustive comparison of the microbiome core functionalities (captured by 3,936 microbial gene abundances) between hosts with divergent genotypes for intramuscular lipid deposition. After 10 generations of divergent selection for intramuscular fat… read more here.
Keywords: functional core; microbiome; core microbiome; comprehensive functional ... See more keywords
Unravelling the core microbiome of biofilms in cooling tower systems
Sign Up to like & getrecommendations! Published in 2017 at "Biofouling"
DOI: 10.1080/08927014.2017.1367386
Abstract: Abstract In this study, next generation sequencing and catalyzed reporter deposition fluorescence in situ hybridization, combined with confocal microscopy, were used to provide insights into the biodiversity and structure of biofilms collected from four full-scale… read more here.
Keywords: microbiome biofilms; unravelling core; biofilms cooling; core microbiome ... See more keywords
Distribution of microbial communities and core microbiome in successive wound grades of diabetic foot ulcer individuals.
Sign Up to like & getrecommendations! Published in 2020 at "Applied and environmental microbiology"
DOI: 10.1128/aem.02608-19
Abstract: Diabetic foot ulcer (DFU) is a major complication of diabetes with high morbidity and mortality rates. Pathogenesis of DFUs is governed by a complex milieu of environmental and host factors. The empirical treatment is initially… read more here.
Keywords: diabetic foot; core microbiome; microbial communities; wound ... See more keywords
Rethinking the Coral Microbiome: Simplicity Exists within a Diverse Microbial Biosphere
Sign Up to like & getrecommendations! Published in 2018 at "mBio"
DOI: 10.1128/mbio.00812-18
Abstract: We propose that the coral holobiont should be conceptualized as a diverse transient microbial community that is responsive to the surrounding environment and encompasses a simple, redundant, resident microbiome and a small conserved core microbiome.… read more here.
Keywords: diverse microbial; coral microbiome; community; resident microbiome ... See more keywords
Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring
Sign Up to like & getrecommendations! Published in 2017 at "mSystems"
DOI: 10.1128/msystems.00119-17
Abstract: The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above… read more here.
Keywords: microbiome; blow; core microbiome; health monitoring ... See more keywords
Comparative Analysis of Core Microbiome Assignments: Implications for Ecological Synthesis
Sign Up to like & getrecommendations! Published in 2023 at "mSystems"
DOI: 10.1128/msystems.01066-22
Abstract: Different methods are commonly used to assign core microbiome membership, leading to methodological inconsistencies across studies. In this study, we review a set of the most commonly used core microbiome assignment methods and compare their… read more here.
Keywords: commonly used; core; core microbiome; assignment methods ... See more keywords
Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)
Sign Up to like & getrecommendations! Published in 2019 at "Microbiome"
DOI: 10.1186/s40168-019-0624-7
Abstract: BackgroundArugula is a traditional medicinal plant and popular leafy green today. It is mainly consumed raw in the Western cuisine and known to contain various bioactive secondary metabolites. However, arugula has been also associated with… read more here.
Keywords: arugula; plant; resistome; microbiome ... See more keywords
The Planktonic Core Microbiome and Core Functions in the Cattle Rumen by Next Generation Sequencing
Sign Up to like & getrecommendations! Published in 2018 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2018.02285
Abstract: The cow rumen harbors a great variety of diverse microbes, which form a complex, organized community. Understanding the behavior of this multifarious network is crucial in improving ruminant nutrient use efficiency. The aim of this… read more here.
Keywords: planktonic core; microbiome core; core microbiome; core functions ... See more keywords