mmquant: how to count multi-mapping reads?
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DOI: 10.1186/s12859-017-1816-4
Abstract: BackgroundRNA-Seq is currently used routinely, and it provides accurate information on gene transcription. However, the method cannot accurately estimate duplicated genes expression. Several strategies have been previously used (drop duplicated genes, distribute uniformly the reads,… read more here.
Keywords: multi mapping; mapping reads; mmquant count; duplicated genes ... See more keywords