OCSANA+: optimal control and simulation of signaling networks from network analysis.
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa625
Abstract: SUMMARY OCSANA+ is a Cytoscape app for identifying nodes to drive the system toward a desired long-term behavior, prioritizing combinations of interventions in large-scale complex networks, and estimating the effects of node perturbations in signaling… read more here.
Keywords: network; cytoscape app; control; analysis ... See more keywords
A Cytoscape app for motif enumeration with ISMAGS
Sign Up to like & getrecommendations! Published in 2017 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btw626
Abstract: Summary: We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif's symmetries to make the search more efficient. The… read more here.
Keywords: cytoscape; cytoscape app; motif enumeration; ismags cytoscape ... See more keywords