Structural biology data archiving – where we are and what lies ahead
Sign Up to like & getrecommendations! Published in 2018 at "Febs Letters"
DOI: 10.1002/1873-3468.13086
Abstract: For almost 50 years, structural biology has endeavoured to conserve and share its experimental data and their interpretations (usually, atomistic models) through global public archives such as the Protein Data Bank, Electron Microscopy Data Bank… read more here.
Keywords: data bank; structural biology; data archiving; biology data ... See more keywords
Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol
Sign Up to like & getrecommendations! Published in 2022 at "Protein Science"
DOI: 10.1002/pro.4271
Abstract: Faculty of Chemistry, A. Mickiewicz University, Poznan, Poland Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland Center for Structural Biology, National Cancer Institute, Frederick, Maryland, USA Department of Molecular Physiology and Biological Physics,… read more here.
Keywords: depositions protein; chemistry; data bank; group depositions ... See more keywords
The Protein Data Bank Archive.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1406-8_1
Abstract: Protein Data Bank is the single worldwide archive of experimentally determined macromolecular structure data. Established in 1971 as the first open access data resource in biology, the PDB archive is managed by the worldwide Protein… read more here.
Keywords: data bank; bank archive; biology; protein data ... See more keywords
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7000-1_26
Abstract: The Protein Data Bank (PDB)--the single global repository of experimentally determined 3D structures of biological macromolecules and their complexes--was established in 1971, becoming the first open-access digital resource in the biological sciences. The PDB archive… read more here.
Keywords: data bank; bank pdb; protein data;
Rectal trauma injuries: outcomes from the U.S. National Trauma Data Bank
Sign Up to like & getrecommendations! Published in 2018 at "Techniques in Coloproctology"
DOI: 10.1007/s10151-018-1856-4
Abstract: BackgroundThere is a lack of general consensus and a little published data regarding the management of trauma-related rectal injuries and outcomes. The aim of the present study was to evaluate the surgical management and corresponding outcomes… read more here.
Keywords: data bank; trauma; management; injuries outcomes ... See more keywords
Facility disparities in reporting comorbidities to the National Trauma Data Bank.
Sign Up to like & getrecommendations! Published in 2018 at "American journal of surgery"
DOI: 10.1016/j.amjsurg.2018.01.031
Abstract: BACKGROUND The National Trauma Data Bank (NTDB) includes patient comorbidities. This study evaluates factors of trauma centers associated with higher rates of missing comorbidity data. METHODS Proportions of missing comorbidity data from facilities in the… read more here.
Keywords: data bank; facility; trauma; trauma data ... See more keywords
Databases for surgical health services research: National Trauma Data Bank and Trauma Quality Improvement Program
Sign Up to like & getrecommendations! Published in 2018 at "Surgery"
DOI: 10.1016/j.surg.2017.12.030
Abstract: h 0 The American College of Surgeons Committee on Trauma (ACCOT) is the oldest standing committee of the American College of urgeons. It was established in 1922 and has made a continuous ffort since then… read more here.
Keywords: data bank; improvement; quality improvement; trauma data ... See more keywords
Multipolar Atom Types from Theory and Statistical Clustering (MATTS) Data Bank: Impact of Surrounding Atoms on Electron Density from Cluster Analysis
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Chemical Information and Modeling"
DOI: 10.1021/acs.jcim.2c00145
Abstract: The multipole model (MM) uses an aspherical approach to describe electron density and can be used to interpret data from X-ray diffraction in a more accurate manner than using the spherical approximation. The MATTS (multipolar… read more here.
Keywords: topology; density; atom types; data bank ... See more keywords
Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.0c00495
Abstract: XLinkDB is a fast-expanding public database now storing more than 100 000 distinct identified cross-linked protein residue pairs acquired by chemical cross-linking with mass spectrometry from samples of 12 species (J. Proteome Res. 2019, 18 (2),… read more here.
Keywords: data bank; cross; cross link; protein data ... See more keywords
Random sampling of the Protein Data Bank: RaSPDB
Sign Up to like & getrecommendations! Published in 2021 at "Scientific Reports"
DOI: 10.1038/s41598-021-03615-y
Abstract: A novel and simple procedure (RaSPDB) for Protein Data Bank mining is described. 10 PDB subsets, each containing 7000 randomly selected protein chains, are built and used to make 10 estimations of the average value… read more here.
Keywords: random sampling; data bank; protein; raspdb ... See more keywords
Mining anion–aromatic interactions in the Protein Data Bank
Sign Up to like & getrecommendations! Published in 2022 at "Chemical Science"
DOI: 10.1039/d2sc00763k
Abstract: Mutual positioning and non-covalent interactions in anion–aromatic motifs are crucial for functional performance of biological systems. In this context, regular, comprehensive Protein Data Bank (PDB) screening that involves various scientific points of view and individual… read more here.
Keywords: data bank; analysis; anion; anion aromatic ... See more keywords