DIA+: A Data-Independent Acquisition Method Combining Multiple Precursor Charges to Improve Peptide Signal.
Sign Up to like & getrecommendations! Published in 2018 at "Analytical chemistry"
DOI: 10.1021/acs.analchem.8b03418
Abstract: Data-independent acquisition methods that acquire fragment ions from virtually any peptide in a sample have expanded the benefits of low-throughput targeted proteomics to proteome-wide analyses. While these methods have increased the reproducibility of peptide quantification… read more here.
Keywords: dia; dia data; data independent; method ... See more keywords
Investigation of Effects of the Spectral Library on Analysis of diaPASEF Data.
Sign Up to like & getrecommendations! Published in 2021 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.1c00899
Abstract: Targeted analysis of data-independent acquisition (DIA) data needs a spectral library, which is generated by data-dependent acquisition (DDA) experiments or directly from DIA data. A comparison of the DDA library and DIA library in analyzing… read more here.
Keywords: dia data; spectral library; diapasef data; analysis diapasef ... See more keywords
SpectroPipeR—a streamlining post Spectronaut® DIA-MS data analysis R package
Sign Up to like & getrecommendations! Published in 2025 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaf086
Abstract: Abstract Summary Proteome studies frequently encounter challenges in down-stream data analysis due to limited bioinformatics resources, rapid data generation, and variations in analytical methods. To address these issues, we developed SpectroPipeR, an R package designed… read more here.
Keywords: spectronaut dia; analysis; dia data; package ... See more keywords