DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac1061
Abstract: Abstract With advanced technologies to map RNA modifications, our understanding of them has been revolutionized, and they are seen to be far more widespread and important than previously thought. Current next-generation sequencing (NGS)-based modification profiling… read more here.
Keywords: modification; rna sequencing; database; rna ... See more keywords
Profiling of circular RNA N6 -methyladenosine in moso bamboo (Phyllostachys edulis) using nanopore-based direct RNA sequencing.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of integrative plant biology"
DOI: 10.1111/jipb.13002
Abstract: N6 -methyladenosine (m6 A) is a prevalent modification in messenger RNAs and circular RNAs that plays important roles in regulating various aspects of RNA metabolism. However, the occurrence of the m6 A modification in plant… read more here.
Keywords: circular rnas; using nanopore; based direct; rna ... See more keywords
Direct RNA Nanopore Sequencing of SARS-CoV-2 Extracted from Critical Material from Swabs
Sign Up to like & getrecommendations! Published in 2022 at "Life"
DOI: 10.3390/life12010069
Abstract: In consideration of the increasing prevalence of COVID-19 cases in several countries and the resulting demand for unbiased sequencing approaches, we performed a direct RNA sequencing (direct RNA seq.) experiment using critical oropharyngeal swab samples… read more here.
Keywords: sars cov; rna nanopore; direct rna; extracted critical ... See more keywords
Rapid, Unbiased PRRSV Strain Detection Using MinION Direct RNA Sequencing and Bioinformatics Tools
Sign Up to like & getrecommendations! Published in 2019 at "Viruses"
DOI: 10.3390/v11121132
Abstract: Prompt detection and effective control of porcine reproductive and respiratory syndrome virus (PRRSV) during outbreaks is important given its immense adverse impact on the swine industry. However, the diagnostic process can be challenging due to… read more here.
Keywords: rna sequencing; direct rna; prrsv; prrsv strain ... See more keywords
Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
Sign Up to like & getrecommendations! Published in 2020 at "eLife"
DOI: 10.7554/elife.49658
Abstract: Understanding genome organization and gene regulation requires insight into RNA transcription, processing and modification. We adapted nanopore direct RNA sequencing to examine RNA from a wild-type accession of the model plant Arabidopsis thaliana and a… read more here.
Keywords: nanopore direct; processing; m6a; rna sequencing ... See more keywords