Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Computer-Aided Molecular Design"
DOI: 10.1007/s10822-017-0020-y
Abstract: The focus of the computational structural biology community has taken a dramatic shift over the past one-and-a-half decades from the classical protein structure prediction problem to the possible understanding of intrinsically disordered proteins (IDP) or… read more here.
Keywords: disorder order; order transitioning; disorder; disordered proteins ... See more keywords
Physical basis of the disorder-order transition.
Sign Up to like & getrecommendations! Published in 2020 at "Archives of biochemistry and biophysics"
DOI: 10.1016/j.abb.2020.108305
Abstract: Intrinsically disordered proteins do not adopt well-defined structures, yet they still play functional roles in many different aspects of biology. Their lack of stable conformations poses new challenges to the quantitative description and understanding of… read more here.
Keywords: order transition; basis disorder; disorder order; biology ... See more keywords
Computational Prediction of MoRFs, Short Disorder-to-order Transitioning Protein Binding Regions
Sign Up to like & getrecommendations! Published in 2019 at "Computational and Structural Biotechnology Journal"
DOI: 10.1016/j.csbj.2019.03.013
Abstract: Molecular recognition features (MoRFs) are short protein-binding regions that undergo disorder-to-order transitions (induced folding) upon binding protein partners. These regions are abundant in nature and can be predicted from protein sequences based on their distinctive… read more here.
Keywords: protein; protein binding; disorder order; morfs short ... See more keywords
The nanoscale control of disorder-to-order layer-stacking boosts multiferroic responses in an Aurivillius-type layered oxide
Sign Up to like & getrecommendations! Published in 2021 at "Journal of Materials Chemistry C"
DOI: 10.1039/d1tc00309g
Abstract: A layer structure with local disorder generated via mixed-layer stacking and slipped Bi2O2-layer defects can induce novel features and excellent performance. read more here.
Keywords: control disorder; layer; layer stacking; disorder order ... See more keywords
Anthraquinone-intercalated V2O5 with Al3+ for superior zinc-ion batteries: reversible transformation between disorder and order.
Sign Up to like & getrecommendations! Published in 2022 at "Chemical communications"
DOI: 10.1039/d2cc04721g
Abstract: Oxygen-deficient anthraquinone (AQ)-intercalated vanadium oxide (1,8-AQ)0.08V2O5·0.25H2O (AQ-VO) was synthesized hydrothermally, which displayed an improved rate capability with an ultralong lifespan in the electrolyte with Al3+ compared with that in the absence of Al3+. These features… read more here.
Keywords: anthraquinone intercalated; disorder order; al3; intercalated v2o5 ... See more keywords
Entropy driven disorder–order transition of a metal–organic framework with frustrated flexibility
Sign Up to like & getrecommendations! Published in 2023 at "APL Materials"
DOI: 10.1063/5.0144718
Abstract: Flexible metal–organic frameworks (MOFs), showing a reversible phase change behavior in response to guest adsorption or temperature, provide unique opportunities for molecular separation or energy storage applications. Herein, we investigate the complex guest- and temperature-responsive… read more here.
Keywords: structure; disorder order; metal organic; temperature ... See more keywords
Disorder to order transition in cell-ECM systems mediated by cell-cell collective interactions.
Sign Up to like & getrecommendations! Published in 2022 at "Acta biomaterialia"
DOI: 10.2139/ssrn.4068152
Abstract: Cells in functional tissues execute various collective activities to achieve diverse ordered processes including wound healing, organogenesis, and tumor formation. How a group of individually operating cells initiate such complex collective processes is still not… read more here.
Keywords: compaction; cell; cell ecm; disorder order ... See more keywords
Classical-Quantum Transition as a Disorder-Order Process
Sign Up to like & getrecommendations! Published in 2022 at "Entropy"
DOI: 10.3390/e24010087
Abstract: We associate here the relationship between de-coherence to the statistical notion of disequilibrium with regards to the dynamics of a system that reflects the interaction between matter and a given field. The process is described… read more here.
Keywords: quantum transition; order process; disorder order; transition disorder ... See more keywords
Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase 5
Sign Up to like & getrecommendations! Published in 2021 at "Genes"
DOI: 10.3390/genes12030399
Abstract: tRNA methyltransferase 5 (Trm5) enzyme is an S-adenosyl methionine (AdoMet)-dependent methyltransferase which methylates the G37 nucleotide at the N1 atom of the tRNA. The free form of Trm5 enzyme has three intrinsically disordered regions, which… read more here.
Keywords: order transition; trm5; disorder order; methyltransferase ... See more keywords