Genome-Wide Identification of Regulatory DNA Elements in Crop Plants.
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9865-4_8
Abstract: cis-regulatory DNA elements (CREs) are noncoding but functional DNA sequences. The binding of regulatory proteins into CRE regions leads to chromatin high sensitive to DNase I digestion, which are termed as DNase I hypersensitive sites… read more here.
Keywords: dnase; regulatory dna; dnase seq; dna elements ... See more keywords
Expanded encyclopaedias of DNA elements in the human and mouse genomes
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DOI: 10.1038/s41586-020-2493-4
Abstract: The human and mouse genomes contain instructions that specify RNAs and proteins and govern the timing, magnitude, and cellular context of their production. To better delineate these elements, phase III of the Encyclopedia of DNA… read more here.
Keywords: mouse genomes; human mouse; expanded encyclopaedias; encyclopaedias dna ... See more keywords
The Encyclopedia of DNA elements (ENCODE): data portal update
Sign Up to like & getrecommendations! Published in 2018 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkx1081
Abstract: Abstract The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center has developed the ENCODE Portal database and website as the source for the data and metadata generated by the ENCODE Consortium. Two principles have motivated… read more here.
Keywords: encyclopedia dna; elements encode; encode data; dna elements ... See more keywords
Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana
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DOI: 10.1186/s13059-019-1722-3
Abstract: BackgroundThe three-dimensional (3D) organization of chromosomes is linked to epigenetic regulation and transcriptional activity. However, only few functional features of 3D chromatin architecture have been described to date. The KNOT is a 3D chromatin structure… read more here.
Keywords: knot; invasive dna; biology; dna elements ... See more keywords
A Plasmid With Conserved Phage Genes Helps Klebsiella pneumoniae Defend Against the Invasion of Transferable DNA Elements at the Cost of Reduced Virulence
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DOI: 10.3389/fmicb.2022.827545
Abstract: Klebsiella pneumoniae exhibits extensive phenotypic and genetic diversity. Higher plasmid loads in the cell were supposed to play an key role in its genome diversity. Although some plasmids are widely distributed in Kp populations, they… read more here.
Keywords: dna elements; klebsiella pneumoniae; phage; virulence ... See more keywords