The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality
Sign Up to like & getrecommendations! Published in 2021 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evab062
Abstract: Abstract Transposable elements (TEs) are major components of eukaryotic genomes and represent approximately 45% of the human genome. TEs can be important sources of novelty in genomes and there is increasing evidence that TEs contribute… read more here.
Keywords: duplication; nuclear elements; duplicated genes; interspersed nuclear ... See more keywords
The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana
Sign Up to like & getrecommendations! Published in 2020 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msaa306
Abstract: Abstract Although gene duplications provide genetic backup and allow genomic changes under relaxed selection, they may potentially limit gene flow. When different copies of a duplicated gene are pseudofunctionalized in different genotypes, genetic incompatibilities can… read more here.
Keywords: genetic incompatibilities; dynamics genetic; evolutionary dynamics; duplicated genes ... See more keywords
Genetic Interactions and Molecular Evolution of the Duplicated Genes ICARUS2 and ICARUS1 Help Arabidopsis Plants Adapt to Different Ambient Temperatures
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DOI: 10.1105/tpc.18.00938
Abstract: Genetic and functional analyses of the duplicated genes ICARUS2 and ICARUS1 in Arabidopsis demonstrate that their natural variation interacts to regulate thermal developmental plasticity. Understanding how plants adapt to ambient temperatures has become a major… read more here.
Keywords: arabidopsis; evolution; plant; duplicated genes ... See more keywords
mmquant: how to count multi-mapping reads?
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1816-4
Abstract: BackgroundRNA-Seq is currently used routinely, and it provides accurate information on gene transcription. However, the method cannot accurately estimate duplicated genes expression. Several strategies have been previously used (drop duplicated genes, distribute uniformly the reads,… read more here.
Keywords: multi mapping; mapping reads; mmquant count; duplicated genes ... See more keywords
Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence
Sign Up to like & getrecommendations! Published in 2021 at "BMC Genomics"
DOI: 10.1186/s12864-021-07776-y
Abstract: Background Duplicated gene pairs produced by ancient polyploidy maintain high sequence similarity over a long period of time and may result from illegitimate recombination between homeologous chromosomes. The genomes of Asian cultivated rice Oryza sativa… read more here.
Keywords: gene conversion; rice subspecies; conversion; duplicated genes ... See more keywords
Genetic Divergence of Lineage-Specific Tandemly Duplicated Gene Clusters in Four Diploid Potato Genotypes
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.875202
Abstract: Potato (Solanum tuberosum L.) is the most important non-grain food crop. Tandem duplication significantly contributes to genome evolution. The objectives of this study were to (i) identify tandemly duplicated genes and compare their genomic distributions… read more here.
Keywords: lineage specific; potato genotypes; gene; duplicated genes ... See more keywords
Genome-wide analysis of tandem duplicated genes and their expression under salt stress in seashore paspalum
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.971999
Abstract: Seashore paspalum (Paspalum vaginatum) is a halophytic, warm-season grass which is closely related to various grain crops. Gene duplication plays an important role in plant evolution, conferring significant plant adaptation at the genomic level. Here,… read more here.
Keywords: salt; seashore paspalum; tandem duplicated; salt stress ... See more keywords