Pig‐specific RNA editing during early embryo development revealed by genome‐wide comparisons
Sign Up to like & getrecommendations! Published in 2020 at "FEBS Open Bio"
DOI: 10.1002/2211-5463.12900
Abstract: Posttranscriptional modification of mRNA sequences through RNA editing can increase transcriptome and proteome diversity in eukaryotes. Studies of fetal and adult tissues showed that adenosine‐to‐inosine RNA editing plays a crucial role in early human development,… read more here.
Keywords: pig specific; rna; embryonic development; editing sites ... See more keywords
Computational Detection of Plant RNA Editing Events.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-0787-9_2
Abstract: Computers are able to systematically exploit RNA-seq data allowing us to efficiently detect RNA editing sites in a genome-wide scale. This chapter introduces a very flexible computational framework for detecting RNA editing sites in plant… read more here.
Keywords: plant; rna; editing sites; computational detection ... See more keywords
The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales
Sign Up to like & getrecommendations! Published in 2017 at "Plant Cell Reports"
DOI: 10.1007/s00299-017-2231-z
Abstract: Key messageThe plastome of Linum usitatissimum was completely sequenced allowing analyses of evolution of genome structure, RNA editing sites, molecular markers, and indicating the position of Linaceae within Malpighiales.AbstractFlax (Linum usitatissimum L.) is an economically… read more here.
Keywords: plastome; linaceae within; linum usitatissimum; editing sites ... See more keywords
Differential RNA Editing of Mitochondrial Genes in WA-Cytoplasmic Based Male Sterile Line Pusa 6A, and Its Maintainer and Restorer Lines
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DOI: 10.1016/j.rsci.2019.08.002
Abstract: Abstract RNA editing changes the nucleotides at the transcript level of mitochondrial genes which results in synthesis of functional proteins. This study was designed to find the editing sites which could be implicated in male… read more here.
Keywords: mitochondrial genes; line; editing sites; maintainer ... See more keywords
PRES: a webserver for decoding the functional perturbations of RNA editing sites
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac242
Abstract: Rapid progresses in RNA-Seq and computational methods have assisted in quantifying A-to-I RNA editing and altered RNA editing sites have been widely observed in various diseases. Nevertheless, functional characterization of the altered RNA editing sites… read more here.
Keywords: rna editing; webserver decoding; pres webserver; perturbations rna ... See more keywords
Emergence of Novel RNA-Editing Sites by Changes in the Binding Affinity of a Conserved PPR Protein
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msac222
Abstract: Abstract RNA editing converts cytidines to uridines in plant organellar transcripts. Editing typically restores codons for conserved amino acids. During evolution, specific C-to-U editing sites can be lost from some plant lineages by genomic C-to-T… read more here.
Keywords: rna editing; ppr protein; emergence novel; editing sites ... See more keywords
The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites
Sign Up to like & getrecommendations! Published in 2018 at "Plant and Cell Physiology"
DOI: 10.1093/pcp/pcy086
Abstract: In land plant organelles, many transcripts are modified by cytidine to uridine RNA editing. Target cytidines are specifically recognized by nuclear-encoded pentatricopeptide repeat (PPR) proteins via their sequence-specific RNA-binding motifs. In the moss Physcomitrella patens,… read more here.
Keywords: editing factors; editing sites; target; dyw domains ... See more keywords
Genome-wide profiling of RNA editing sites in sheep
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Animal Science and Biotechnology"
DOI: 10.1186/s40104-019-0331-z
Abstract: BackgroundThe widely observed RNA-DNA differences (RDDs) have been found to be due to nucleotide alteration by RNA editing. Canonical RNA editing (i.e., A-to-I and C-to-U editing) mediated by the adenosine deaminases acting on RNA (ADAR)… read more here.
Keywords: genome wide; kidney spleen; rna; editing sites ... See more keywords
PRESa2i: incremental decision trees for prediction of Adenosine to Inosine RNA editing sites
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DOI: 10.12688/f1000research.22823.1
Abstract: RNA editing is a very crucial cellular process affecting protein encoding and is sometimes correlated with the cause of fatal diseases, such as cancer. Thus knowledge about RNA editing sites in a RNA sequence is… read more here.
Keywords: adenosine inosine; incremental decision; rna; editing sites ... See more keywords
Genome-wide identification and analysis of A-to-I RNA editing events in bovine by transcriptome sequencing
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DOI: 10.1371/journal.pone.0193316
Abstract: RNA editing increases the diversity of the transcriptome and proteome. Adenosine-to-inosine (A-to-I) editing is the predominant type of RNA editing in mammals and it is catalyzed by the adenosine deaminases acting on RNA (ADARs) family.… read more here.
Keywords: genome wide; wide identification; analysis; rna ... See more keywords
Assembly of the Complete Mitochondrial Genome of Chinese Plum (Prunus salicina): Characterization of Genome Recombination and RNA Editing Sites
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DOI: 10.3390/genes12121970
Abstract: Despite the significant progress that has been made in the genome sequencing of Prunus, this area of research has been lacking a systematic description of the mitochondrial genome of this genus for a long time.… read more here.
Keywords: rna editing; prunus; editing sites; plum ... See more keywords