Parameterizing elastic network models to capture the dynamics of proteins
Sign Up to like & getrecommendations! Published in 2021 at "Journal of Computational Chemistry"
DOI: 10.1002/jcc.26701
Abstract: Coarse‐grained normal mode analyses of protein dynamics rely on the idea that the geometry of a protein structure contains enough information for computing its fluctuations around its equilibrium conformation. This geometry is captured in the… read more here.
Keywords: network; network models; geometry; parameterizing elastic ... See more keywords
Identification of Allosteric Effects in Proteins by Elastic Network Models.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1154-8_3
Abstract: Allostery is a fundamental regulatory mechanism in the majority of biological processes of molecular machines. Allostery is well-known as a dynamic-driven process, and thus, the molecular mechanism of allosteric signal transmission needs to be established.… read more here.
Keywords: allosteric effects; network; network models; model ... See more keywords
Multifocus image fusion using a convolutional elastic network
Sign Up to like & getrecommendations! Published in 2022 at "Multimedia Tools and Applications"
DOI: 10.1007/s11042-021-11362-5
Abstract: The aim of multifocus image fusion is to fuse two or more partially focused images into one fully focused image. To overcome the problem of a limited depth of field and blurred imaging of objects… read more here.
Keywords: image fusion; fusion; elastic network; image ... See more keywords
Loop dynamics behind the affinity of DARPins towards ERK2: Molecular dynamics simulations (MDs) and elastic network model (ENM)
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Molecular Liquids"
DOI: 10.1016/j.molliq.2018.10.157
Abstract: Abstract The binding affinity and dynamics profiles of non-phosphorylated extracellular regulated kinase 2 (ERK2), in complex with DARPins (designed ankyrin repeat proteins) as a phosphorylation inhibitor, has been investigated using molecular dynamics simulations (MDs) and… read more here.
Keywords: enm; dynamics simulations; affinity; molecular dynamics ... See more keywords
Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics
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DOI: 10.1371/journal.pone.0199225
Abstract: Dynamic communities in proteins comprise the cohesive structural units that individually exhibit rigid body motions. These can correspond to structural domains, but are usually smaller parts that move with respect to one another in a… read more here.
Keywords: network models; community; protein dynamic; elastic network ... See more keywords