IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data
Sign Up to like & getrecommendations! Published in 2023 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbad080
Abstract: The adaptive immune receptor repertoire (AIRR), consisting of T- and B-cell receptors, is the core component of the immune system. The AIRR sequencing is commonly used in cancer immunotherapy and minimal residual disease (MRD) detection… read more here.
Keywords: sequencing data; paired end; end reads; merger sequencing ... See more keywords
Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags
Sign Up to like & getrecommendations! Published in 2018 at "GigaScience"
DOI: 10.1093/gigascience/gix129
Abstract: Abstract Background Illumina paired-end sequencing has been increasingly popular for 16S rRNA gene-based microbiota profiling. It provides higher phylogenetic resolution than single-end reads due to a longer read length. However, the reverse read (R2) often… read more here.
Keywords: end single; end; hybrid denovo; paired end ... See more keywords
NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2579-2
Abstract: BackgroundAdvances in Illumina DNA sequencing technology have produced longer paired-end reads that increasingly have sequence overlaps. These reads can be merged into a single read that spans the full length of the original DNA fragment,… read more here.
Keywords: quality; merging programs; paired end; end reads ... See more keywords