PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix
Sign Up to like & getrecommendations! Published in 2018 at "Bioinformatics"
DOI: 10.1093/bioinformatics/bty127
Abstract: Abstract Summary Transcription factors regulate gene expression by binding to specific short DNA sequences of 5–20 bp to regulate the rate of transcription of genetic information from DNA to messenger RNA. We present PWMScan, a… read more here.
Keywords: genomes position; entire genomes; scanning entire; tool scanning ... See more keywords
Batch-Learning Self-Organizing Map Identifies Horizontal Gene Transfer Candidates and Their Origins in Entire Genomes
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2020.01486
Abstract: Horizontal gene transfer (HGT) has been widely suggested to play a critical role in the environmental adaptation of microbes; however, the number and origin of the genes in microbial genomes obtained through HGT remain unknown… read more here.
Keywords: hgt candidates; entire genomes; gene transfer; batch learning ... See more keywords