A comprehensive evaluation of single-end sequencing data analyses for environmental microbiome research.
Sign Up to like & getrecommendations! Published in 2021 at "Archives of microbiology"
DOI: 10.1007/s00203-021-02597-9
Abstract: Illumina sequencing platforms have been widely used for amplicon-based environmental microbiome research. Analyses of amplicon data of environmental samples, generated from Illumina MiSeq platform illustrate the reverse (R2) reads in the PE datasets to have… read more here.
Keywords: sequencing data; microbiome research; environmental microbiome; single end ... See more keywords
Effect of Amplicon Sequencing Depth in Environmental Microbiome Research.
Sign Up to like & getrecommendations! Published in 2021 at "Current microbiology"
DOI: 10.1007/s00284-021-02345-8
Abstract: Amplicon sequencing approach is commonly employed in microbiome studies and sequencing depth is considered as a major factor influencing the outcome of data analyses. As of now, the effect of amplicon sequencing depth in environmental… read more here.
Keywords: effect amplicon; data analyses; environmental microbiome; microbiome ... See more keywords
Environmental microbiome mapping as a strategy to improve quality and safety in the food industry
Sign Up to like & getrecommendations! Published in 2021 at "Current opinion in food science"
DOI: 10.1016/j.cofs.2020.11.012
Abstract: In food industries, an environmentally-adapted microbiome can colonize the surfaces of equipment and tools and be transferred to the food product or intermediates of production. These complex microbial consortia may include microbial spoilers, pathogens, as… read more here.
Keywords: quality; microbiome mapping; quality safety; environmental microbiome ... See more keywords
Ability of Two Strains of Lactic Acid Bacteria To Inhibit Listeria monocytogenes by Spot Inoculation and in an Environmental Microbiome Context
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DOI: 10.1128/spectrum.01018-22
Abstract: Listeria monocytogenes has previously been associated with outbreaks of foodborne illness linked to consumption of fresh produce. In addition to conventional cleaning and sanitizing, lactic acid bacteria (LAB) have been studied for biocontrol of L.… read more here.
Keywords: spot inoculation; inoculation; acid bacteria; lactic acid ... See more keywords
Analysis and Characterization of Glutathione Peroxidases in an Environmental Microbiome and Isolated Bacterial Microorganisms
Sign Up to like & getrecommendations! Published in 2023 at "Journal of Microbiology and Biotechnology"
DOI: 10.4014/jmb.2209.09006
Abstract: Glutathione peroxidases (Gpx) are a group of antioxidant enzymes that protect cells or tissues against damage from reactive oxygen species (ROS). The Gpx proteins identified in mammals exhibit high catalytic activity toward glutathione (GSH). In… read more here.
Keywords: trx dependent; gpx; microbiome isolated; glutathione peroxidases ... See more keywords