Genetic signatures of plant resistance genes with known function within and between species
Sign Up to like & getrecommendations! Published in 2018 at "Genetica"
DOI: 10.1007/s10709-018-0044-9
Abstract: Plant disease resistance (R) genes have undergone significant evolutionary divergence to cope with rapid changes in pathogens. These highly variable evolutionary patterns may have contributed to diversity in R gene protein families or structures. Here,… read more here.
Keywords: plant; within species; genetic signatures; evolutionary patterns ... See more keywords
Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac433
Abstract: Abstract Summary We present Mirage 2.0, which accurately estimates gene-content evolutionary history by considering heterogeneous evolutionary patterns among gene families. Notably, we introduce a deterministic pattern mixture model, which makes Mirage substantially faster and more… read more here.
Keywords: considering heterogeneous; evolutionary patterns; gene content; patterns among ... See more keywords
Effect of host-switching on the ecological and evolutionary patterns of parasites.
Sign Up to like & getrecommendations! Published in 2023 at "Systematic biology"
DOI: 10.1093/sysbio/syad022
Abstract: Speciation via host-switching is a macroevolutionary process that emerges from a microevolutionary dynamic where individual parasites switch hosts, establish a new association, and reduce reproductive contact with the original parasite lineage. Phylogenetic distance and geographic… read more here.
Keywords: evolutionary patterns; host switching; ecological evolutionary; patterns parasites ... See more keywords
Evolutionary patterns of chromosomal instability and mismatch repair deficiency in proximal and distal colorectal cancer
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DOI: 10.1111/codi.15946
Abstract: Colorectal carcinomas (CRCs) progress through heterogeneous pathways. The aim of this study was to analyse whether or not the cytogenetic evolution of CRC is linked to tumour site, level of chromosomal imbalance and metastasis. read more here.
Keywords: instability mismatch; repair deficiency; patterns chromosomal; evolutionary patterns ... See more keywords
Integrated flow cytometry and sequencing to reconstruct evolutionary patterns from dysplasia to acute myeloid leukemia
Sign Up to like & getrecommendations! Published in 2022 at "Blood Advances"
DOI: 10.1182/bloodadvances.2022008141
Abstract: Key Points • Targeted sequencing of dysplastic cells and blasts at diagnosis identifies evolutionary patterns from dysplasia to the onset of AML.• Patients with AML may present different clonal involvement in dysplastic myelo-erythropoiesis, leukemic transformation,… read more here.
Keywords: patterns dysplasia; flow cytometry; integrated flow; evolutionary patterns ... See more keywords
Genome-wide analysis of NBS-LRR genes in Rosaceae species reveals distinct evolutionary patterns
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.1052191
Abstract: The nucleotide-binding site and leucine-rich repeat (NBS-LRR) genes, one of the largest gene families in plants, are evolving rapidly and playing a critical role in plant resistance to pathogens. In this study, a genome-wide search… read more here.
Keywords: lrr genes; nbs lrr; rosaceae species; evolutionary patterns ... See more keywords
Evolutionary Patterns of the Chloroplast Genome in Vanilloid Orchids (Vanilloideae, Orchidaceae)
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DOI: 10.3390/ijms24043808
Abstract: The Vanilloideae (vanilloids) is one of five subfamilies of Orchidaceae and is composed of fourteen genera and approximately 245 species. In this study, the six new chloroplast genomes (plastomes) of vanilloids (two Lecanorchis, two Pogonia,… read more here.
Keywords: vanilloid plastomes; patterns chloroplast; substitution rates; sub regions ... See more keywords
A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing
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DOI: 10.3390/v13101994
Abstract: African swine fever virus (ASFV) is the etiological agent of the devastating disease African swine fever (ASF), for which there is currently no licensed vaccine or treatment available. ASF is defined as one of the… read more here.
Keywords: asfv; insight evolutionary; deeper insight; phylogenetic history ... See more keywords