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   Articles with "evolutionary scenarios" as a keyword



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fastsimcoal2: demographic inference under complex evolutionary scenarios.

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recommendations! Published in 2021 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btab468

Abstract: MOTIVATION fastsimcoal2 extends fastsimcoal, a continuous time coalescent-based genetic simulation program, by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. RESULTS Other improvements include… read more here.

Keywords: demographic inference; evolutionary scenarios; inference complex; complex evolutionary ... See more keywords
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IAGS: Inferring Ancestor Genome Structure under a Wide Range of Evolutionary Scenarios

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recommendations! Published in 2022 at "Molecular Biology and Evolution"

DOI: 10.1093/molbev/msac041

Abstract: Abstract Significant improvements in genome sequencing and assembly technology have led to increasing numbers of high-quality genomes, revealing complex evolutionary scenarios such as multiple whole-genome duplication events, which hinders ancestral genome reconstruction via the currently… read more here.

Keywords: ancestor genome; evolutionary scenarios; inferring ancestor; genome ... See more keywords
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SLiM 2: Flexible, Interactive Forward Genetic Simulations

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recommendations! Published in 2017 at "Molecular Biology and Evolution"

DOI: 10.1093/molbev/msw211

Abstract: Modern population genomic datasets hold immense promise for revealing the evolutionary processes operating in natural populations, but a crucial prerequisite for this goal is the ability to model realistic evolutionary scenarios and predict their expected… read more here.

Keywords: flexible interactive; genetic simulations; slim flexible; evolutionary scenarios ... See more keywords
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PastView: a user-friendly interface to explore ancestral scenarios

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recommendations! Published in 2019 at "BMC Evolutionary Biology"

DOI: 10.1186/s12862-019-1490-4

Abstract: BackgroundAncestral character states computed from the combination of phylogenetic trees with extrinsic traits are used to decipher evolutionary scenarios in various research fields such as phylogeography, epidemiology, and ecology. Despite the existence of powerful methods… read more here.

Keywords: evolutionary scenarios; ancestral character; character states; character ... See more keywords
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Chimeric Structure of Plant Malic Enzyme Family: Different Evolutionary Scenarios for NAD- and NADP-Dependent Isoforms

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recommendations! Published in 2018 at "Frontiers in Plant Science"

DOI: 10.3389/fpls.2018.00565

Abstract: Malic enzyme (ME) comprises a family of proteins with multiple isoforms located in different compartments of eukaryotic cells. In plants, cytosolic and plastidic enzymes share several characteristics such as NADP specificity (NADP-ME), oxaloacetate decarboxylase (OAD)… read more here.

Keywords: plant; plant mnad; malic enzyme; family ... See more keywords