BBKNN: fast batch alignment of single cell transcriptomes
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz625
Abstract: MOTIVATION Increasing numbers of large scale single cell RNA-Seq projects are leading to a data explosion, which can only be fully exploited through data integration. A number of methods have been developed to combine diverse… read more here.
Keywords: single cell; alignment single; bbknn fast; batch alignment ... See more keywords
Fast batch searching for protein homology based on compression and clustering
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1938-8
Abstract: BackgroundIn bioinformatics community, many tasks associate with matching a set of protein query sequences in large sequence datasets. To conduct multiple queries in the database, a common used method is to run BLAST on each… read more here.
Keywords: compression; batch searching; database; fast batch ... See more keywords