Fast and flexible analysis of linked microbiome data with mako.
Sign Up to like & getrecommendations! Published in 2021 at "Nature methods"
DOI: 10.1038/s41592-021-01335-9
Abstract: Mako is a software tool that converts microbiome data and networks into a graph database and visualizes query results, thus allowing users without programming knowledge to carry out network-based queries. Mako is accompanied by a… read more here.
Keywords: fast flexible; flexible analysis; microbiome data; data mako ... See more keywords
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Sign Up to like & getrecommendations! Published in 2019 at "Genome research"
DOI: 10.1101/gr.241455.118
Abstract: The routine use of genomics for disease surveillance provides the opportunity for high-resolution bacterial epidemiology. Current whole-genome clustering and multilocus typing approaches do not fully exploit core and accessory genomic variation, and they cannot both… read more here.
Keywords: flexible bacterial; bacterial genomic; genomic epidemiology; epidemiology ... See more keywords