Functional association prediction by community profiling.
Sign Up to like & getrecommendations! Published in 2017 at "Methods"
DOI: 10.1016/j.ymeth.2017.04.018
Abstract: Recent years have witnessed unprecedented accumulation of DNA sequences and therefore protein sequences (predicted from DNA sequences), due to the advances of sequencing technology. One of the major sources of the hypothetical proteins is the… read more here.
Keywords: community; functional association; profiling approach; community profiling ... See more keywords
Genome-wide functional association networks: background, data & state-of-the-art resources
Sign Up to like & getrecommendations! Published in 2020 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbz064
Abstract: Abstract The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used… read more here.
Keywords: genome wide; field; association networks; functional association ... See more keywords
PPNet: Identifying Functional Association Networks by Phylogenetic Profiling of Prokaryotic Genomes
Sign Up to like & getrecommendations! Published in 2023 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.03871-22
Abstract: This study developed PPNet, the first tool that can be used to infer large-scale bacterial functional association networks of a single species. PPNet includes a method for assigning the uniqueness of a bacterial strain using… read more here.
Keywords: ppnet; functional association; average nucleotide; phylogenetic profiling ... See more keywords