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   Articles with "functional association" as a keyword



Functional association prediction by community profiling.

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recommendations! Published in 2017 at "Methods"

DOI: 10.1016/j.ymeth.2017.04.018

Abstract: Recent years have witnessed unprecedented accumulation of DNA sequences and therefore protein sequences (predicted from DNA sequences), due to the advances of sequencing technology. One of the major sources of the hypothetical proteins is the… read more here.

Keywords: community; functional association; profiling approach; community profiling ... See more keywords

Genome-wide functional association networks: background, data & state-of-the-art resources

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recommendations! Published in 2020 at "Briefings in Bioinformatics"

DOI: 10.1093/bib/bbz064

Abstract: Abstract The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used… read more here.

Keywords: genome wide; field; association networks; functional association ... See more keywords

FunCoup 6: advancing functional association networks across species with directed links and improved user experience

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recommendations! Published in 2024 at "Nucleic Acids Research"

DOI: 10.1101/2024.09.13.612391

Abstract: FunCoup 6 (https://funcoup6.scilifelab.se/, will be https://funcoup.org after publication) represents a significant advancement in global functional association networks, aiming to provide researchers with a comprehensive view of the functional coupling interactome. This update introduces novel methodologies… read more here.

Keywords: funcoup; functional association; funcoup advancing; association networks ... See more keywords
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PPNet: Identifying Functional Association Networks by Phylogenetic Profiling of Prokaryotic Genomes

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recommendations! Published in 2023 at "Microbiology Spectrum"

DOI: 10.1128/spectrum.03871-22

Abstract: This study developed PPNet, the first tool that can be used to infer large-scale bacterial functional association networks of a single species. PPNet includes a method for assigning the uniqueness of a bacterial strain using… read more here.

Keywords: ppnet; functional association; average nucleotide; phylogenetic profiling ... See more keywords