Reexamining nodality in equivalence classes
Sign Up to like & getrecommendations! Published in 2022 at "Journal of the Experimental Analysis of Behavior"
DOI: 10.1002/jeab.793
Abstract: Equivalence classes are defined according to the substitutability, or functional similarity, of the stimuli within a stimulus class. Several studies have demonstrated that the degree of functional similarity between stimuli in a class is dependent,… read more here.
Keywords: nodality equivalence; equivalence classes; functional similarity; nodality ... See more keywords
Exploring Approaches for Detecting Protein Functional Similarity within an Orthology-based Framework
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DOI: 10.1038/s41598-017-00465-5
Abstract: Protein functional similarity based on gene ontology (GO) annotations serves as a powerful tool when comparing proteins on a functional level in applications such as protein-protein interaction prediction, gene prioritization, and disease gene discovery. Functional similarity… read more here.
Keywords: similarity; functional similarity; exploring approaches; protein functional ... See more keywords
Computational models for lncRNA function prediction and functional similarity calculation
Sign Up to like & getrecommendations! Published in 2019 at "Briefings in Functional Genomics"
DOI: 10.1093/bfgp/ely031
Abstract: Abstract From transcriptional noise to dark matter of biology, the rapidly changing view of long non‐coding RNA (lncRNA) leads to deep understanding of human complex diseases induced by abnormal expression of lncRNAs. There is urgent… read more here.
Keywords: functional similarity; computational models; function; prediction ... See more keywords
Significance and Functional Similarity for Identification of Disease Genes
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DOI: 10.1109/tcbb.2016.2598163
Abstract: One of the most significant research issues in functional genomics is insilico identification of disease related genes. In this regard, the paper presents a new gene selection algorithm, termed as SiFS, for identification of disease… read more here.
Keywords: similarity; functional similarity; identification disease; disease genes ... See more keywords
GOGCN: Graph Convolutional Network on Gene Ontology for Functional Similarity Analysis of Genes
Sign Up to like & getrecommendations! Published in 2022 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2022.3181300
Abstract: The measurement of gene functional similarity plays a critical role in numerous biological applications, such as gene clustering, the construction of gene similarity networks. However, most existing approaches still rely heavily on traditional computational strategies,… read more here.
Keywords: gogcn; ontology; functional similarity; gene ontology ... See more keywords
Clumpy coexistence in phytoplankton: the role of functional similarity in community assembly
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DOI: 10.1111/oik.08677
Abstract: Emergent neutrality (EN) suggests that species must be sufficiently similar or sufficiently different in their niches to avoid interspecific competition. Such a scenario results in a transient pattern with clumps and gaps of species abundance… read more here.
Keywords: clump; functional similarity; size; community assembly ... See more keywords