The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
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DOI: 10.1186/s40104-019-0359-0
Abstract: The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from individual… read more here.
Keywords: variants rna; method; gatk joint; calling variants ... See more keywords