Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs
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DOI: 10.1093/bioinformatics/btad151
Abstract: Abstract Motivation Pairwise sequence alignment is a very time-consuming step in common bioinformatics pipelines. Speeding up this step requires heuristics, efficient implementations, and/or hardware acceleration. A promising candidate for all of the above is the… read more here.
Keywords: scrooge; genasm; sequence; scrooge fast ... See more keywords