A genome‐wide analysis of NPF and NRT2 transporter gene families in bread wheat provides new insights into the distribution, function, regulation and evolution of nitrate transporters
Sign Up to like & getrecommendations! Published in 2021 at "Plant and Soil"
DOI: 10.1007/s11104-021-04927-8
Abstract: Nitrate transporters (NRT) in plants are mainly encoded by the NPF and NRT2 gene families. We aimed to reveal the chromosome distribution, collinearity, coexpression and evolution of the NPF and NRT2 genes in the genome… read more here.
Keywords: npf nrt2; gene families; analysis; nrt2 genes ... See more keywords
Comparative genomics of 40 edible and medicinal mushrooms provide an insight into the evolution of lignocellulose decomposition mechanisms
Sign Up to like & getrecommendations! Published in 2019 at "3 Biotech"
DOI: 10.1007/s13205-019-1689-5
Abstract: Diversity comparison and phylogenetic analyses of carbohydrate-active enzymes (CAZymes), auxiliary activities (AAs) and cytochromes P450 among 40 fungi, which are based on different nutritional pathways, help clarify and explain their divergence and improvement of various… read more here.
Keywords: comparative genomics; gene families; evolution; lignocellulose decomposition ... See more keywords
Characterization of the heterotrimeric G protein gene families in Triticum aestivum and related species
Sign Up to like & getrecommendations! Published in 2022 at "3 Biotech"
DOI: 10.1007/s13205-022-03156-9
Abstract: This study characterizes the heterotrimeric G protein gene families in Triticum aestivum, their tissue-specific expression patterns during development and in response to biotic and abiotic stress conditions. There are three Gα genes, three Gβ and… read more here.
Keywords: families triticum; heterotrimeric protein; protein gene; gene ... See more keywords
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages
Sign Up to like & getrecommendations! Published in 2018 at "Nature Communications"
DOI: 10.1038/s41467-018-04295-5
Abstract: The development of malaria parasites throughout their various life cycle stages is coordinated by changes in gene expression. We previously showed that the three-dimensional organization of the Plasmodium falciparum genome is strongly associated with gene… read more here.
Keywords: gene families; gene expression; specific gene; malaria parasites ... See more keywords
Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-70061-7
Abstract: RNA silencing is a conserved mechanism in eukaryotic organisms to regulate gene expression. Argonaute (AGO), Dicer-like (DCL) and RNA-dependent RNA polymerase (RDR) proteins are critical components of RNA silencing, but how these gene families’ functions… read more here.
Keywords: genome wide; gene families; dcl ago; spontaneum ... See more keywords
De novo transcriptome characterization of Iris atropurpurea (the Royal Iris) and phylogenetic analysis of MADS-box and R2R3-MYB gene families.
Sign Up to like & getrecommendations! Published in 2021 at "Scientific reports"
DOI: 10.1038/s41598-021-95085-5
Abstract: The Royal Irises (section Oncocyclus) are a Middle-Eastern group of irises, characterized by extremely large flowers with a huge range of flower colors and a unique pollination system. The Royal Irises are considered to be… read more here.
Keywords: gene families; novo transcriptome; mads box; royal ... See more keywords
Wolfberry genomes and the evolution of Lycium (Solanaceae)
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DOI: 10.1038/s42003-021-02152-8
Abstract: Wolfberry Lycium , an economically important genus of the Solanaceae family, contains approximately 80 species and shows a fragmented distribution pattern among the Northern and Southern Hemispheres. Although several herbaceous species of Solanaceae have been… read more here.
Keywords: gene families; solanaceae; wolfberry; lycium ... See more keywords
Comparative analysis of mite genomes reveals positive selection for diet adaptation
Sign Up to like & getrecommendations! Published in 2021 at "Communications Biology"
DOI: 10.1038/s42003-021-02173-3
Abstract: Diet is a powerful evolutionary force for species adaptation and diversification. Acari is one of the most abundant clades of Arachnida, exhibiting diverse dietary types, while the underlying genetic adaptive mechanisms are not fully understood.… read more here.
Keywords: feeding species; comparative analysis; gene families; selection ... See more keywords
PlantGF: an analysis and annotation platform for plant gene families.
Sign Up to like & getrecommendations! Published in 2022 at "Database : the journal of biological databases and curation"
DOI: 10.1093/database/baab088
Abstract: Gene families contain genes that come from the same ancestor and have similar sequences and structures. They perform certain specific functions within and among different species. Currently, there is no complete process or platform for… read more here.
Keywords: plant gene; analysis; gene families; gene ... See more keywords
Ab Initio Construction and Evolutionary Analysis of Protein-Coding Gene Families with Partially Homologous Relationships: Closely Related Drosophila Genomes as a Case Study
Sign Up to like & getrecommendations! Published in 2020 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evaa041
Abstract: Abstract How have genes evolved within a well-known genome phylogeny? Many protein-coding genes should have evolved as a whole at the gene level, and some should have evolved partly through fragments at the subgene level.… read more here.
Keywords: gene families; homologous relationships; protein coding; coding gene ... See more keywords
De Novo Gene Birth, Horizontal Gene Transfer, and Gene Duplication as Sources of New Gene Families Associated with the Origin of Symbiosis in Amanita
Sign Up to like & getrecommendations! Published in 2020 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evaa193
Abstract: Abstract By introducing novel capacities and functions, new genes and gene families may play a crucial role in ecological transitions. Mechanisms generating new gene families include de novo gene birth, horizontal gene transfer, and neofunctionalization… read more here.
Keywords: gene families; novo gene; gene birth; symbiosis ... See more keywords