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   Articles with "gene models" as a keyword



GTFtools: a software package for analyzing various features of gene models

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recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac561

Abstract: MOTIVATION Gene-centric bioinformatics studies frequently involve calculation or extraction of various features of genes such as splice sites, promoters, independent introns, and untranslated regions (UTRs) through manipulation of gene models. Gene models are often annotated… read more here.

Keywords: software; gene models; package; various features ... See more keywords

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

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recommendations! Published in 2018 at "BMC Genomics"

DOI: 10.1186/s12864-018-4704-z

Abstract: BackgroundThe accurate determination of the genomic coordinates for a given gene – its gene model – is of vital importance to the utility of its annotation, and the accuracy of bioinformatic analyses derived from it.… read more here.

Keywords: gene model; omgene mutual; mutual improvement; gene ... See more keywords

Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato

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recommendations! Published in 2019 at "Frontiers in Plant Science"

DOI: 10.3389/fpls.2019.00689

Abstract: Tomato (Solanum lycopersicum) is an important vegetable and fruit crop. Its genome was completely sequenced and there are also a large amount of available expressed sequence tags (ESTs) and short reads generated by RNA sequencing… read more here.

Keywords: information; tomato; rna seq; alternative splicing ... See more keywords

Leishmania infantum (JPCM5) Transcriptome, Gene Models and Resources for an Active Curation of Gene Annotations

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recommendations! Published in 2023 at "Genes"

DOI: 10.3390/genes14040866

Abstract: Leishmania infantum is one of the causative agents of visceral leishmaniases, the most severe form of leishmaniasis. An improved assembly for the L. infantum genome was published five years ago, yet delineation of its transcriptome… read more here.

Keywords: seq; rna seq; leishmania infantum; seq reads ... See more keywords

Community Resource: Large-Scale Proteogenomics to Refine Wheat Genome Annotations

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recommendations! Published in 2024 at "International Journal of Molecular Sciences"

DOI: 10.3390/ijms25168614

Abstract: Triticum aestivum is an important crop whose reference genome (International Wheat Genome Sequencing Consortium (IWGSC) RefSeq v2.1) offers a valuable resource for understanding wheat genetic structure, improving agronomic traits, and developing new cultivars. A key… read more here.

Keywords: wheat; community; unique peptides; gene models ... See more keywords