Complete mitochondrial genome of Ophichthus brevicaudatus reveals novel gene order and phylogenetic relationships of Anguilliformes.
Sign Up to like & getrecommendations! Published in 2019 at "International journal of biological macromolecules"
DOI: 10.1016/j.ijbiomac.2019.05.139
Abstract: Generally, a teleostean group possesses only one type or a set of similar mitochondrial gene arrangement. However, two types of gene arrangement have been identified in the mitochondrial genomes (mitogenomes) of Anguilliformes. Here, a newly… read more here.
Keywords: gene arrangement; gene order; ophichthus brevicaudatus; brevicaudatus ... See more keywords
Mitochondrial gene order evolution in Mollusca: Inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae).
Sign Up to like & getrecommendations! Published in 2018 at "Molecular phylogenetics and evolution"
DOI: 10.1016/j.ympev.2017.12.013
Abstract: The mitochondrial genome architecture of polyplacophorans has been usually regarded as being very ancient in comparison to all mollusks. However, even if some complete chiton mtDNAs have been recently sequenced, thorough studies of their evolution… read more here.
Keywords: gene order; gene; chaetopleura apiculata; mollusca ... See more keywords
Genome Rearrangement Distance with a Flexible Intergenic Regions Aspect.
Sign Up to like & getrecommendations! Published in 2022 at "IEEE/ACM transactions on computational biology and bioinformatics"
DOI: 10.1109/tcbb.2022.3165443
Abstract: Most mathematical models for genome rearrangement problems have considered only gene order. In this way, the rearrangement distance considering some set of events, such as reversal and transposition events, is commonly defined as the minimum… read more here.
Keywords: rearrangement distance; gene order; genome rearrangement; rearrangement ... See more keywords
Evolution of mitogenomic gene order in Orthoptera.
Sign Up to like & getrecommendations! Published in 2023 at "Insect molecular biology"
DOI: 10.1111/imb.12838
Abstract: Mitochondrial gene order has contributed to the elucidation of evolutionary relationships in several animal groups. It generally has found its application as a phylogenetic marker for deep nodes. Yet, in Orthoptera limited research has been… read more here.
Keywords: orthoptera; evolution mitogenomic; gene order; gene ... See more keywords
Chromosomal Position of Ribosomal Protein Genes Affects Long-Term Evolution of Vibrio cholerae
Sign Up to like & getrecommendations! Published in 2022 at "mBio"
DOI: 10.1128/mbio.03432-22
Abstract: The bacterial chromosome harbors several entangled processes such as replication, transcription, DNA repair, and segregation. Replication begins bidirectionally at the replication origin (oriC) until the terminal region (ter) organizing the genome along the ori-ter axis… read more here.
Keywords: growth; ribosomal protein; physiology; gene order ... See more keywords
Phylogeny analysis from gene-order data with massive duplications
Sign Up to like & getrecommendations! Published in 2017 at "BMC Genomics"
DOI: 10.1186/s12864-017-4129-0
Abstract: BackgroundGene order changes, under rearrangements, insertions, deletions and duplications, have been used as a new type of data source for phylogenetic reconstruction. Because these changes are rare compared to sequence mutations, they allow the inference… read more here.
Keywords: order; whole genome; gene order; massive duplications ... See more keywords
IMGT® Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies
Sign Up to like & getrecommendations! Published in 2022 at "Biomolecules"
DOI: 10.3390/biom12030381
Abstract: IMGT®, the international ImMunoGeneTics information system®, created in 1989, by Marie-Paule Lefranc (Université de Montpellier and CNRS), marked the advent of immunoinformatics, a new science which emerged at the interface between immunogenetics and bioinformatics for… read more here.
Keywords: loci gene; imgt homo; homo sapiens; sapiens loci ... See more keywords
Mitochondrial Genome Diversity in Collembola: Phylogeny, Dating and Gene Order
Sign Up to like & getrecommendations! Published in 2019 at "Diversity"
DOI: 10.3390/d11090169
Abstract: Collembola (springtails) are an early diverging class of apterygotes, and mark the first substantial radiation of hexapods on land. Despite extensive work, the relationships between major collembolan lineages are still debated and, apart from the… read more here.
Keywords: mitochondrial genome; gene order; genome diversity; diversity ... See more keywords