A data processing pipeline for the AACR project GENIE biopharma collaborative data with the {genieBPC} R package
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac796
Abstract: Abstract Motivation Data from the American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange Biopharma Collaborative (GENIE BPC) represent comprehensive clinical data linked to high-throughput sequencing data, providing a multi-institution, pan-cancer, publicly available… read more here.
Keywords: data processing; project; geniebpc package; processing pipeline ... See more keywords
Abstract LB056: Crowdsourcing rare cancer research in the Hack4NF GENIE-NF tumor identification and classification challenge
Sign Up to like & getrecommendations! Published in 2023 at "Cancer Research"
DOI: 10.1158/1538-7445.am2023-lb056
Abstract: A key challenge in rare tumor research is the paucity of genomic data that can be used to understand and devise better therapeutic strategies for rare cancers. Furthermore, the “curse of dimensionality,” in which data… read more here.
Keywords: cancer research; challenge; genie; tumor ... See more keywords
Linked Entity Attribute Pair (LEAP): A Harmonization Framework for Data Pooling
Sign Up to like & getrecommendations! Published in 2020 at "JCO Clinical Cancer Informatics"
DOI: 10.1200/cci.20.00037
Abstract: PURPOSE As data-sharing projects become increasingly frequent, so does the need to map data elements between multiple classification systems. A generic, robust, shareable architecture will result in increased efficiency and transparency of the mapping process,… read more here.
Keywords: linked entity; classification systems; cancer; genie ... See more keywords