A chromosome-level genome assembly of Paracymoriza distinctalis (Lepidoptera: Crambidae: Acentropinae).
Sign Up to like & getrecommendations! Published in 2022 at "Archives of insect biochemistry and physiology"
DOI: 10.1002/arch.21883
Abstract: Paracymoriza distinctalis is a semiaquatic lepidopteran insect, which is of great value for studying the differentiation of the Pyraloidea superfamily. However, the understanding of heredity, evolution, and functional genomics of P. distinctalis are limited by… read more here.
Keywords: genome assembly; paracymoriza distinctalis; genome; chromosome level ... See more keywords
Improved genomic resources for the black tiger prawn (Penaeus monodon).
Sign Up to like & getrecommendations! Published in 2020 at "Marine genomics"
DOI: 10.1016/j.margen.2020.100751
Abstract: World production of farmed crustaceans was 7.8 million tons in 2016. While only making up approximately 10% of world aquaculture production, crustaceans are generally high-value species and can earn significant export income for producing countries.… read more here.
Keywords: monodon genome; genome assembly; tiger prawn; genome ... See more keywords
A chromosome-level genome assembly of garlic (Allium sativum L.) provides insights into genome evolution and allicin biosynthesis.
Sign Up to like & getrecommendations! Published in 2020 at "Molecular plant"
DOI: 10.1016/j.molp.2020.07.019
Abstract: Garlic, an economically important vegetable, spice, and medicinal crop, produces highly enlarged bulbs and unique organosulfur compounds. Here, we report a chromosome-level genome assembly for garlic, with a total size of approximately 16.24 gigabases, and… read more here.
Keywords: biosynthesis; assembly garlic; genome assembly; level genome ... See more keywords
A chromosome-level genome of the kuruma shrimp (Marsupenaeus japonicus) provides insights into its evolution and cold-resistance mechanism.
Sign Up to like & getrecommendations! Published in 2022 at "Genomics"
DOI: 10.1016/j.ygeno.2022.110373
Abstract: Marsupenaeus japonicus is an important marine crustacean species. However, a lack of genomic resources hinders the use of whole genome sequencing to explore their genetic basis and molecular mechanisms for genome-assisted breeding. Consequently, we determined… read more here.
Keywords: level genome; genome; chromosome level; japonicus ... See more keywords
Three invariant Hi-C interaction patterns: Applications to genome assembly.
Sign Up to like & getrecommendations! Published in 2018 at "Methods"
DOI: 10.1016/j.ymeth.2018.04.013
Abstract: Assembly of reference-quality genomes from next-generation sequencing data is a key challenge in genomics. Recently, we and others have shown that Hi-C data can be used to address several outstanding challenges in the field of… read more here.
Keywords: genome assembly; three invariant; invariant interaction; invariant patterns ... See more keywords
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing.
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture research"
DOI: 10.1038/s41438-020-00343-8
Abstract: Sweet cherry (Prunus avium) is an economically significant fruit species in the genus Prunus. However, in contrast to other important fruit trees in this genus, only one draft genome assembly is available for sweet cherry,… read more here.
Keywords: cherry prunus; genome assembly; chromosome scale; genome ... See more keywords
Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture Research"
DOI: 10.1038/s41438-020-0271-y
Abstract: Asparagus setaceus is a popular ornamental plant cultivated in tropical and subtropical regions globally. Here, we constructed a chromosome-scale reference genome of A. setaceus to facilitate the investigation of its genome characteristics and evolution. Using… read more here.
Keywords: setaceus; genome assembly; evolutionary analysis; genome ... See more keywords
A de novo genome assembly of the dwarfing pear rootstock Zhongai 1
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Data"
DOI: 10.1038/s41597-019-0291-3
Abstract: ‘Zhongai 1’ [(Pyrus ussuriensis × communis) × spp.] is an excellent pear dwarfing rootstock common in China. It is dwarf itself and has high dwarfing efficiency on most of main Pyrus cultivated species when used as inter-stock. Here we… read more here.
Keywords: genome assembly; pyrus; sequencing assay; genome ... See more keywords
A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Data"
DOI: 10.1038/s41597-019-0296-y
Abstract: The deciduous Chinese tupelo (Nyssa sinensis Oliv.) is a popular ornamental tree for the spectacular autumn leaf color. Here, using single-molecule sequencing and chromosome conformation capture data, we report a high-quality, chromosome-level genome assembly of… read more here.
Keywords: sinensis; chinese tupelo; tupelo nyssa; genome assembly ... See more keywords
Amynthas corticis genome reveals molecular mechanisms behind global distribution
Sign Up to like & getrecommendations! Published in 2021 at "Communications Biology"
DOI: 10.1038/s42003-021-01659-4
Abstract: Earthworms (Annelida: Crassiclitellata) are widely distributed around the world due to their ancient origination as well as adaptation and invasion after introduction into new habitats over the past few centuries. Herein, we report a 1.2 Gb… read more here.
Keywords: analysis; genome assembly; amynthas corticis; corticis genome ... See more keywords
A comprehensive review of scaffolding methods in genome assembly
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbab033
Abstract: In the field of genome assembly, scaffolding methods make it possible to obtain a more complete and contiguous reference genome, which is the cornerstone of genomic research. Scaffolding methods typically utilize the alignments between contigs… read more here.
Keywords: scaffolding methods; genome assembly; genome; methods genome ... See more keywords