A chromosome-level genome assembly of Paracymoriza distinctalis (Lepidoptera: Crambidae: Acentropinae).
Sign Up to like & getrecommendations! Published in 2022 at "Archives of insect biochemistry and physiology"
DOI: 10.1002/arch.21883
Abstract: Paracymoriza distinctalis is a semiaquatic lepidopteran insect, which is of great value for studying the differentiation of the Pyraloidea superfamily. However, the understanding of heredity, evolution, and functional genomics of P. distinctalis are limited by… read more here.
Keywords: genome assembly; paracymoriza distinctalis; genome; chromosome level ... See more keywords
Chromosome-level genome assembly and functional annotation of Citrullus colocynthis: unlocking genetic resources for drought-resilient crop development
Sign Up to like & getrecommendations! Published in 2024 at "Planta"
DOI: 10.1007/s00425-024-04551-7
Abstract: The chromosome-level genome assembly of Citrullus colocynthis reveals its genetic potential for enhancing drought tolerance, paving the way for innovative crop improvement strategies. This study presents the first comprehensive genome assembly and annotation of Citrullus… read more here.
Keywords: citrullus colocynthis; genome assembly; colocynthis; chromosome level ... See more keywords
De Novo Genome Assembly and Comparative Genome Analysis of the Novel Human Fungal Pathogen Trichosporon austroamericanum Type-Strain CBS 17435
Sign Up to like & getrecommendations! Published in 2025 at "Mycopathologia"
DOI: 10.1007/s11046-025-00942-w
Abstract: Trichosporon austroamericanum is a recently described species recognized for its emerging clinical significance in invasive trichosporonosis. In this study, we present the nanopore long-read-based de novo genome assembly of the type-strain CBS 17435. Additionally, we… read more here.
Keywords: genome assembly; trichosporon; trichosporon austroamericanum; novo genome ... See more keywords
Improved genomic resources for the black tiger prawn (Penaeus monodon).
Sign Up to like & getrecommendations! Published in 2020 at "Marine genomics"
DOI: 10.1016/j.margen.2020.100751
Abstract: World production of farmed crustaceans was 7.8 million tons in 2016. While only making up approximately 10% of world aquaculture production, crustaceans are generally high-value species and can earn significant export income for producing countries.… read more here.
Keywords: monodon genome; genome assembly; tiger prawn; genome ... See more keywords
A chromosome-level genome assembly of garlic (Allium sativum L.) provides insights into genome evolution and allicin biosynthesis.
Sign Up to like & getrecommendations! Published in 2020 at "Molecular plant"
DOI: 10.1016/j.molp.2020.07.019
Abstract: Garlic, an economically important vegetable, spice, and medicinal crop, produces highly enlarged bulbs and unique organosulfur compounds. Here, we report a chromosome-level genome assembly for garlic, with a total size of approximately 16.24 gigabases, and… read more here.
Keywords: biosynthesis; assembly garlic; genome assembly; level genome ... See more keywords
A chromosome-level genome of the kuruma shrimp (Marsupenaeus japonicus) provides insights into its evolution and cold-resistance mechanism.
Sign Up to like & getrecommendations! Published in 2022 at "Genomics"
DOI: 10.1016/j.ygeno.2022.110373
Abstract: Marsupenaeus japonicus is an important marine crustacean species. However, a lack of genomic resources hinders the use of whole genome sequencing to explore their genetic basis and molecular mechanisms for genome-assisted breeding. Consequently, we determined… read more here.
Keywords: level genome; genome; chromosome level; japonicus ... See more keywords
Three invariant Hi-C interaction patterns: Applications to genome assembly.
Sign Up to like & getrecommendations! Published in 2018 at "Methods"
DOI: 10.1016/j.ymeth.2018.04.013
Abstract: Assembly of reference-quality genomes from next-generation sequencing data is a key challenge in genomics. Recently, we and others have shown that Hi-C data can be used to address several outstanding challenges in the field of… read more here.
Keywords: genome assembly; three invariant; invariant interaction; invariant patterns ... See more keywords
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing.
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture research"
DOI: 10.1038/s41438-020-00343-8
Abstract: Sweet cherry (Prunus avium) is an economically significant fruit species in the genus Prunus. However, in contrast to other important fruit trees in this genus, only one draft genome assembly is available for sweet cherry,… read more here.
Keywords: cherry prunus; genome assembly; chromosome scale; genome ... See more keywords
Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture Research"
DOI: 10.1038/s41438-020-0271-y
Abstract: Asparagus setaceus is a popular ornamental plant cultivated in tropical and subtropical regions globally. Here, we constructed a chromosome-scale reference genome of A. setaceus to facilitate the investigation of its genome characteristics and evolution. Using… read more here.
Keywords: setaceus; genome assembly; evolutionary analysis; genome ... See more keywords
De novo diploid genome assembly using long noisy reads
Sign Up to like & getrecommendations! Published in 2024 at "Nature Communications"
DOI: 10.1038/s41467-024-47349-7
Abstract: The high sequencing error rate has impeded the application of long noisy reads for diploid genome assembly. Most existing assemblers failed to generate high-quality phased assemblies using long noisy reads. Here, we present PECAT, a… read more here.
Keywords: diploid genome; genome assembly; noisy reads; using long ... See more keywords
A de novo genome assembly of the dwarfing pear rootstock Zhongai 1
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Data"
DOI: 10.1038/s41597-019-0291-3
Abstract: ‘Zhongai 1’ [(Pyrus ussuriensis × communis) × spp.] is an excellent pear dwarfing rootstock common in China. It is dwarf itself and has high dwarfing efficiency on most of main Pyrus cultivated species when used as inter-stock. Here we… read more here.
Keywords: genome assembly; pyrus; sequencing assay; genome ... See more keywords