Genome‐based survey of the SARS‐CoV‐2 BF.7 variant from Asia
Sign Up to like & getrecommendations! Published in 2023 at "Journal of Medical Virology"
DOI: 10.1002/jmv.28714
Abstract: The SARS‐CoV‐2 BF.7 variant represents one of the most recent subvariant under monitoring. At the beginning of the 2023 it caused several concerns especially in Asia because of a resurge in COVID‐19 cases. Here we… read more here.
Keywords: cov variant; genome based; asia; based survey ... See more keywords
Practically delineating bacterial species with genealogical concordance
Sign Up to like & getrecommendations! Published in 2017 at "Antonie van Leeuwenhoek"
DOI: 10.1007/s10482-017-0869-8
Abstract: Bacterial species are commonly defined by applying a set of predetermined criteria, including DNA–DNA hybridization values, 16S rRNA gene sequence similarity, phenotypic data as well as genome-based criteria such as average nucleotide identity or digital… read more here.
Keywords: bacterial species; dna; genome based; practically delineating ... See more keywords
Genome-based analysis of SFTSV causing severe encephalitis with brain lesions
Sign Up to like & getrecommendations! Published in 2019 at "Journal of NeuroVirology"
DOI: 10.1007/s13365-019-00816-0
Abstract: Encephalitis is an infrequent manifestation in the various spectrums caused by severe fever with thrombocytopenia syndrome virus (SFTSV) infection. There are few data about the possible pathogenic mechanisms of SFTSV-associated encephalitis. Here, two SFTSV-infected patients… read more here.
Keywords: genome based; sftsv; encephalitis; without encephalitis ... See more keywords
Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth
Sign Up to like & getrecommendations! Published in 2017 at "Current Biology"
DOI: 10.1016/j.cub.2017.09.064
Abstract: While present-day taxa are valuable proxies for understanding the biology of extinct species, it is also crucial to examine physical remains in order to obtain a more comprehensive view of their behavior, social structure, and… read more here.
Keywords: woolly mammoth; social structure; genome based; behavior social ... See more keywords
Genome based evolutionary lineage of SARS-CoV-2 towards the development of novel chimeric vaccine
Sign Up to like & getrecommendations! Published in 2020 at "Infection, Genetics and Evolution"
DOI: 10.1016/j.meegid.2020.104517
Abstract: The present study aimed to predict a novel chimeric vaccine by simultaneously targeting four major structural proteins via the establishment of ancestral relationship among different strains of coronaviruses. Conserved regions from the homologous protein sets… read more here.
Keywords: vaccine; genome based; novel chimeric; chimeric vaccine ... See more keywords
Plastome organization, genome-based phylogeny and evolution of plastid genes in Podophylloideae (Berberidaceae).
Sign Up to like & getrecommendations! Published in 2018 at "Molecular phylogenetics and evolution"
DOI: 10.1016/j.ympev.2018.07.001
Abstract: Species of Podophylloideae (Berberidaceae, Ranunculales) are of great pharmacogenetic importance and represent the classic biogeographic disjunction between eastern Asia (EA; 10 ssp.) and eastern North America (ENA; 2 ssp.). However, previous molecular studies of this… read more here.
Keywords: podophylloideae berberidaceae; evolution; plastid; genome based ... See more keywords
Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/s41598-017-17392-0
Abstract: There is a need to clarify relationships within the actinobacterial genus Micromonospora, the type genus of the family Micromonosporaceae, given its biotechnological and ecological importance. Here, draft genomes of 40 Micromonospora type strains and two… read more here.
Keywords: biotechnological ecological; genome based; based classification; micromonosporae ... See more keywords
Genome-based Salmonella serotyping as the new gold standard
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-61254-1
Abstract: Salmonella enterica is the second most reported bacterial cause of food-borne infections in Europe. Therefore molecular surveillance activities based on pathogen subtyping are an important measure of controlling Salmonellosis by public health agencies. In Germany,… read more here.
Keywords: gold standard; genome based; new gold; salmonella ... See more keywords
Building a genome-based understanding of bacterial pH preferences
Sign Up to like & getrecommendations! Published in 2023 at "Science Advances"
DOI: 10.1101/2023.01.24.524446
Abstract: The environmental preferences of many microbes remain undetermined. This is the case for bacterial pH preferences, which can be difficult to predict a priori despite the importance of pH as a factor structuring bacterial communities… read more here.
Keywords: based understanding; understanding bacterial; bacterial preferences; bacterial taxa ... See more keywords
A Fitted Sparse-Group Lasso for Genome-Based Evaluations
Sign Up to like & getrecommendations! Published in 2022 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2022.3156805
Abstract: In life sciences, high-throughput techniques typically lead to high-dimensional data and often the number of covariates is much larger than the number of observations. This inherently comes with multicollinearity challenging a statistical analysis in a… read more here.
Keywords: group lasso; lasso genome; genome based; group ... See more keywords
Genome-Based Prediction of Bacterial Antibiotic Resistance
Sign Up to like & getrecommendations! Published in 2018 at "Journal of Clinical Microbiology"
DOI: 10.1128/jcm.01405-18
Abstract: Clinical microbiology has long relied on growing bacteria in culture to determine antimicrobial susceptibility profiles, but the use of whole-genome sequencing for antibiotic susceptibility testing (WGS-AST) is now a powerful alternative. This review discusses the… read more here.
Keywords: genome based; microbiology; resistance; antibiotic resistance ... See more keywords