The Draft Genome of the Centric Diatom Conticribra weissflogii (Coscinodiscophyceae, Ochrophyta).
Sign Up to like & getrecommendations! Published in 2021 at "Protist"
DOI: 10.1016/j.protis.2021.125845
Abstract: Here, we present a 231 Mb draft genome of the centric diatom Conticribra weissflogii CCMP1336. Comparative genomics of C. weissflogii and other Ochrophyta support the existence of unique carbon-concentrating mechanisms and chitin metabolic processes in diatoms.… read more here.
Keywords: draft genome; genome centric; conticribra weissflogii; diatom conticribra ... See more keywords
Genome-centric microbiome analysis reveals solid retention time (SRT)-shaped species interactions and niche differentiation in food waste and sludge co-digesters.
Sign Up to like & getrecommendations! Published in 2020 at "Water research"
DOI: 10.1016/j.watres.2020.115858
Abstract: Co-digestion of food waste with sewage sludge is widely applied for waste stabilization and energy recovery around the world. However, the effect of solid retention time (SRT) on the microbial population dynamics, metabolism and interspecies… read more here.
Keywords: time srt; waste; solid retention; retention time ... See more keywords
Linking Genome-Centric Metagenomics to Kinetic Analysis Reveals the Regulation Mechanism of Hydroxylamine in Nitrite Accumulation of Biological Denitrification.
Sign Up to like & getrecommendations! Published in 2022 at "Environmental science & technology"
DOI: 10.1021/acs.est.2c01914
Abstract: Given hydroxylamine accumulation in various nitrification systems and its potential mechanism in regulating the subsequent denitrification process were unraveled in this study. Hydroxylamine (>0.5 mgN/L) immediately induced nitrite accumulation of activated sludge by inhibiting the… read more here.
Keywords: hydroxylamine; centric metagenomics; accumulation; nitrite accumulation ... See more keywords
Genome-Centric Metagenomics and Metaproteomics Profiled the Shared and Unique Taxa in Isomeric Fatty Acid-Differentiated Anaerobic Co-Digestion of Food Waste and Sludge.
Sign Up to like & getrecommendations! Published in 2025 at "Environmental science & technology"
DOI: 10.1021/acs.est.4c09839
Abstract: Fatty acids (FAs)-involving structures, widely occurring in production and life, have been increasingly considered as major feedstocks and potential platforms for renewable energy generation. However, the role of isomeric FAs (particularly trans-FAs) in high-concerned energy-reserving… read more here.
Keywords: genome centric; anaerobic digestion; food waste; waste sludge ... See more keywords
Spatial Distribution and Diverse Metabolic Functions of Lignocellulose-Degrading Uncultured Bacteria as Revealed by Genome-Centric Metagenomics
Sign Up to like & getrecommendations! Published in 2018 at "Applied and Environmental Microbiology"
DOI: 10.1128/aem.01244-18
Abstract: This work contributes new knowledge about lignocellulose degradation in engineered ecosystems. Specifically, the combination of the spatial distribution of uncultured microbes with genome-centric metagenomics provides novel insights into the metabolic properties of planktonic and firmly… read more here.
Keywords: degradation; spatial distribution; centric metagenomics; diverse metabolic ... See more keywords
Metapresence: a tool for accurate species detection in metagenomics based on the genome-wide distribution of mapping reads
Sign Up to like & getrecommendations! Published in 2024 at "mSystems"
DOI: 10.1128/msystems.00213-24
Abstract: ABSTRACT Shotgun metagenomics allows comprehensive sampling of the genomic information of microbes in a given environment and is a tool of choice for studying complex microbial systems. Mapping sequencing reads against a set of reference… read more here.
Keywords: genome centric; tool; community composition; community ... See more keywords