Genome classification improvements based on k-mer intervals in sequences.
Sign Up to like & getrecommendations! Published in 2018 at "Genomics"
DOI: 10.1016/j.ygeno.2018.11.001
Abstract: Given the vast amount of genomic data, alignment-free sequence comparison methods are required due to their low computational complexity. k-mer based methods can improve comparison accuracy by extracting an effective feature of the genome sequences.… read more here.
Keywords: classification; mer intervals; genome sequences; genome classification ... See more keywords
TEPI: Taxonomy-Aware Embedding and Pseudo-Imaging for Scarcely-Labeled Zero-Shot Genome Classification
Sign Up to like & getrecommendations! Published in 2024 at "IEEE Journal of Biomedical and Health Informatics"
DOI: 10.1109/jbhi.2024.3358842
Abstract: A species' genetic code or genome encodes valuable evolutionary, biological, and phylogenetic information that aids in species recognition, taxonomic classification, and understanding genetic predispositions like drug resistance and virulence. However, the vast number of potential… read more here.
Keywords: classification; pseudo; zero shot; taxonomy aware ... See more keywords