Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics
Sign Up to like & getrecommendations! Published in 2021 at "Nature Communications"
DOI: 10.1038/s41467-021-23553-7
Abstract: Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in the root microbiome. At present, the molecular mechanisms underlying these responses remain largely uncharacterized. Here we employ genome-resolved metagenomics and comparative genomics… read more here.
Keywords: drought; metabolism; drought induced; resolved metagenomics ... See more keywords
Genome-resolved metagenomics reveals novel archaeal and bacterial genomes from Amazonian forest and pasture soils
Sign Up to like & getrecommendations! Published in 2022 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000853
Abstract: Amazonian soil microbial communities are known to be affected by the forest-to-pasture conversion, but the identity and metabolic potential of most of their organisms remain poorly characterized. To contribute to the understanding of these communities,… read more here.
Keywords: resolved metagenomics; pasture; pasture soils; genome resolved ... See more keywords
Genome-resolved metagenomics to study co-occurrence patterns and intraspecific heterogeneity among plant pathogen metapopulations.
Sign Up to like & getrecommendations! Published in 2020 at "Environmental microbiology"
DOI: 10.1111/1462-2920.14989
Abstract: Assessment of pathogen diversity in agricultural fields is essential for informing management decisions and the development of resistant plant varieties. However, many population genomic studies have relied on culture-based approaches that do not provide quantitative… read more here.
Keywords: pathogen; plant; metagenomics study; occurrence ... See more keywords
Predominance of Methanomicrobiales and diverse hydrocarbon-degrading taxa in the Appalachian coalbed biosphere revealed through metagenomics and genome-resolved metabolisms.
Sign Up to like & getrecommendations! Published in 2022 at "Environmental microbiology"
DOI: 10.1111/1462-2920.16251
Abstract: Coalbed deposits are a unique subsurface environment and represent an underutilized resource for methane generation. Microbial communities extant in coalbed deposits are responsible for key subsurface biogeochemical cycling and could be utilized to enhance methane… read more here.
Keywords: diverse hydrocarbon; predominance methanomicrobiales; methanomicrobiales diverse; genome resolved ... See more keywords
Advancing Genome-Resolved Metagenomics beyond the Shotgun
Sign Up to like & getrecommendations! Published in 2019 at "mSystems"
DOI: 10.1128/msystems.00118-19
Abstract: Exploration of environmental microbiomes has shed light on the ecological and evolutionary principles at play in natural ecosystems and has been further accelerated through the reconstruction of population genomes to provide genome-centric context. Yet technical… read more here.
Keywords: resolved metagenomics; genome resolved; metagenomics beyond; advancing genome ... See more keywords
Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms
Sign Up to like & getrecommendations! Published in 2020 at "mSystems"
DOI: 10.1128/msystems.00299-20
Abstract: Accurately assessing the production of bioaccumulative neurotoxic methylmercury by characterizing the phylogenetic diversity, metabolic functions, and activity of methylators in the environment is crucial for understanding constraints on the mercury cycle. Much of our understanding… read more here.
Keywords: genome resolved; methylmercury; diversity metabolic; phylogenetic diversity ... See more keywords
MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
Sign Up to like & getrecommendations! Published in 2022 at "mSystems"
DOI: 10.1128/msystems.00432-22
Abstract: Genome-resolved metagenomics has led to the discovery of previously untapped biodiversity within the microbial world. As the development of computational methods for the recovery of genomes from metagenomes continues, existing strategies need to be evaluated… read more here.
Keywords: resolved metagenomics; binning strategies; genome resolved; magneto automated ... See more keywords
Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions
Sign Up to like & getrecommendations! Published in 2021 at "BMC Genomics"
DOI: 10.1186/s12864-021-07957-9
Abstract: Background Composting is an important technique for environment-friendly degradation of organic material, and is a microbe-driven process. Previous metagenomic studies of composting have presented a general description of the taxonomic and functional diversity of its… read more here.
Keywords: metagenome metatranscriptome; metabolic interactions; metatranscriptome analyses; resolved metagenome ... See more keywords
Identification of shared bacterial strains in the vaginal microbiota of related and unrelated reproductive-age mothers and daughters using genome-resolved metagenomics
Sign Up to like & getrecommendations! Published in 2022 at "PLOS ONE"
DOI: 10.1371/journal.pone.0275908
Abstract: It has been suggested that the human microbiome might be vertically transmitted from mother to offspring and that early colonizers may play a critical role in development of the immune system. Studies have shown limited… read more here.
Keywords: reproductive age; resolved metagenomics; microbiota; bacterial strains ... See more keywords
Genome-resolved analyses of oligotrophic groundwater microbial communities along phenol pollution in a continuous-flow biodegradation model system
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2023.1147162
Abstract: Groundwater pollution is one of the major environmental concerns. The entrance of pollutants into the oligotrophic groundwater ecosystems alters native microbial community structure and metabolism. This study investigated the application of innovative Small Bioreactor Chambers… read more here.
Keywords: oligotrophic groundwater; genome resolved; microscopy; analyses oligotrophic ... See more keywords