Bioinformatics Approaches for Analyzing Multigene Families Encoding Immune Receptors.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1944-5_11
Abstract: Genome sequences are quickly becoming available from a variety of organisms, providing researchers with an abundance of previously inaccessible information and an important source of insight into immune mechanisms. There are a variety of methods… read more here.
Keywords: immune receptors; genome sequences; approaches analyzing; bioinformatics approaches ... See more keywords
Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions
Sign Up to like & getrecommendations! Published in 2019 at "Archives of Microbiology"
DOI: 10.1007/s00203-019-01755-4
Abstract: Pseudomonas prosekii is a recently described species isolated exclusively from James Ross Island close to the Antarctic Peninsula at 64° south latitude. Here, we present two P. prosekii genome sequences and their analyses with respect… read more here.
Keywords: two antarctic; pseudomonas prosekii; genome sequences; antarctic strains ... See more keywords
Draft Genome Sequences of Proteus mirabilis K1609 and K670: A Model Strains for Territoriality Examination
Sign Up to like & getrecommendations! Published in 2018 at "Current Microbiology"
DOI: 10.1007/s00284-018-1598-6
Abstract: Proteus mirabilis is a pathogenic Gram-negative bacterium characterized by its ability to swarm across surfaces, which frequently leads to colonization of the urinary tract and causes severe infections. P. mirabilis strains are also well known… read more here.
Keywords: genome sequences; recognition; model; proteus mirabilis ... See more keywords
Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere
Sign Up to like & getrecommendations! Published in 2018 at "Extremophiles"
DOI: 10.1007/s00792-018-1015-x
Abstract: Genome analyses are being used to characterize plant growth-promoting (PGP) bacteria living in different plant compartiments. In this context, we have recently isolated bacteria from the phyllosphere of an Antarctic plant (Deschampsia antarctica) showing ice… read more here.
Keywords: iri activity; deschampsia antarctica; genome sequences; sequences bacteria ... See more keywords
Characterization of the mitochondrial genome sequences of the liver fluke Amphimerus sp. (Trematoda: Opisthorchiidae) from Ecuador and phylogenetic implications.
Sign Up to like & getrecommendations! Published in 2019 at "Acta tropica"
DOI: 10.1016/j.actatropica.2019.04.025
Abstract: Amphimerus Barker, 1911 is a liver fluke infecting several animal species and humans. Being a digenetic trematode of the Opisthorchiidae family, Amphimerus is closely related to the genera Metorchis, Clonorchis and Opisthorchis. Recently, a high… read more here.
Keywords: liver fluke; opisthorchiidae; genome sequences; amphimerus ... See more keywords
Draft genome sequences of extended-spectrum β-lactamase-producing Enterobacter aerogenes isolated from swine and human.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of global antimicrobial resistance"
DOI: 10.1016/j.jgar.2018.06.006
Abstract: OBJECTIVES The draft genome sequences of two Enterobacter aerogenes strains (HN503E2II and PN108E5IIB) isolated from two Cameroonian abattoirs are reported. METHODS Bacterial genomic DNA of the two isolates was sequenced using an Illumina MiSeq platform.… read more here.
Keywords: draft genome; genome sequences; resistance; genome ... See more keywords
Genome sequences of two multidrug-resistant Escherichia coli strains MEZEC8 and MEZEC10 isolated from livestock in South Africa.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of global antimicrobial resistance"
DOI: 10.1016/j.jgar.2020.11.008
Abstract: OBJECTIVES The emergence of antimicrobial-resistant, livestock-associated Escherichia coli represents a great public health concern. Here, we report the draft genome sequences of two multidrug-resistant, livestock-associated E. coli strains isolated from sheep in South Africa. METHODS… read more here.
Keywords: mezec8 mezec10; livestock; strains mezec8; genome sequences ... See more keywords
Genome Sequences of Antibiotic-Resistant Escherichia coli Isolated from Veal Calves in the United States.
Sign Up to like & getrecommendations! Published in 2021 at "Journal of global antimicrobial resistance"
DOI: 10.1016/j.jgar.2021.04.024
Abstract: OBJECTIVE To describe the genome sequences of 38 antibiotic-resistant Escherichia coli from veal calves. MATERIALS AND METHODS The isolates were recovered in 2015 from nine veal farms in the eastern United States and were screened… read more here.
Keywords: genome sequences; antibiotic resistant; resistant escherichia; coli ... See more keywords
Magnus Representation of Genome Sequences.
Sign Up to like & getrecommendations! Published in 2019 at "Journal of theoretical biology"
DOI: 10.1016/j.jtbi.2019.08.004
Abstract: We introduce an alignment-free method, the Magnus Representation, to analyze genome sequences. The Magnus Representation captures higher-order information in genome sequences. We combine our approach with the idea of k-mers to define an effectively computable… read more here.
Keywords: genome sequences; representation genome; magnus representation; bacterial genomes ... See more keywords
Plant genome sequences: past, present, future.
Sign Up to like & getrecommendations! Published in 2019 at "Current opinion in plant biology"
DOI: 10.1016/j.pbi.2018.11.001
Abstract: The green plants (Viridiplantae) are an essential kingdom of life, responsible via photosynthesis for the majority of global primary production, and directly utilized by humankind for nutrition, animal feed, fuel, clothing, medicine and other purposes.… read more here.
Keywords: plant; genome sequences; sequences past; plant genome ... See more keywords
Genome classification improvements based on k-mer intervals in sequences.
Sign Up to like & getrecommendations! Published in 2018 at "Genomics"
DOI: 10.1016/j.ygeno.2018.11.001
Abstract: Given the vast amount of genomic data, alignment-free sequence comparison methods are required due to their low computational complexity. k-mer based methods can improve comparison accuracy by extracting an effective feature of the genome sequences.… read more here.
Keywords: classification; mer intervals; genome sequences; genome classification ... See more keywords