From Whole-Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7683-6_14
Abstract: ViromeScan is an innovative metagenomic analysis tool that allows the viral community characterization in terms of taxonomy from raw data of metagenomics sequencing. It efficiently denoises samples from reads of other microorganisms. Users can adopt… read more here.
Keywords: whole genome; genome shotgun; tool; shotgun sequencing ... See more keywords
Biocomputational identification and validation of novel microRNAs predicted from bubaline whole genome shotgun sequences
Sign Up to like & getrecommendations! Published in 2017 at "Computational biology and chemistry"
DOI: 10.1016/j.compbiolchem.2017.08.005
Abstract: MicroRNAs (miRNAs) are small (19-25 base long), non-coding RNAs that regulate post-transcriptional gene expression by cleaving targeted mRNAs in several eukaryotes. The miRNAs play vital roles in multiple biological and metabolic processes, including developmental timing,… read more here.
Keywords: identification; genome shotgun; chemistry; whole genome ... See more keywords
First report on whole-genome shotgun sequences of 23 biochemically indistinguishable clinical Shigella isolates.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of global antimicrobial resistance"
DOI: 10.1016/j.jgar.2016.12.009
Abstract: Shigella spp. are a major diarrhoeal disease pathogen worldwide and can cause considerable morbidity and mortality. Notably, limited genome data are available for serogroups/sub-serogroups of Shigella. Here we report the whole-genome shotgun sequences of 23… read more here.
Keywords: shotgun sequences; whole genome; genome shotgun; shigella ... See more keywords
Whole genome shotgun sequencing of POPs degrading bacterial community dwelling tannery effluents and petrol contaminated soil.
Sign Up to like & getrecommendations! Published in 2020 at "Microbiological research"
DOI: 10.1016/j.micres.2020.126504
Abstract: The present study involved identification of genes which are present in the genome of native bacteria to make them effective tools for bioremediation of persistent organic pollutants (POPs). During this study, forty-one POPs (naphthalene, toluene… read more here.
Keywords: petrol; genome shotgun; whole genome; shotgun sequencing ... See more keywords
Whole-Genome Shotgun Metagenomic Sequencing Reveals Distinct Gut Microbiome Signatures of Obese Cats
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.00837-22
Abstract: Obesity affects around 45% of domestic cats, and licensed drugs for treating feline obesity are lacking. Physical exercise and calorie restrictions are commonly used for weight loss but with limited efficacy. ABSTRACT Overweight and obesity… read more here.
Keywords: whole genome; microbiome; obesity; shotgun metagenomic ... See more keywords