Evaluating individual genome similarity with a topic model
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa583
Abstract: MOTIVATION Evaluating genome similarity among individuals is an essential step in data analysis. Advanced sequencing technology detects more and rarer variants for massive individual genomes, thus enabling individual-level genome similarity evaluation. However, the current methodologies… read more here.
Keywords: similarity; genome similarity; individual genome; topic model ... See more keywords
A Proposal for a Genome Similarity-Based Taxonomy for Plant-Pathogenic Bacteria that Is Sufficiently Precise to Reflect Phylogeny, Host Range, and Outbreak Affiliation Applied to Pseudomonas syringae sensu lato as a Proof of Concept.
Sign Up to like & getrecommendations! Published in 2017 at "Phytopathology"
DOI: 10.1094/phyto-07-16-0252-r
Abstract: Taxonomy of plant pathogenic bacteria is challenging because pathogens of different crops often belong to the same named species but current taxonomy does not provide names for bacteria below the subspecies level. The introduction of… read more here.
Keywords: genome similarity; host range; taxonomy plant;