wholeskim: Utilising Genome Skims for Taxonomically Annotating Ancient DNA Metagenomes
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DOI: 10.1111/1755-0998.70001
Abstract: Inferring community composition from shotgun sequencing of environmental DNA is highly dependent on the completeness of reference databases used to assign taxonomic information as well as the pipeline used. While the number of complete, fully… read more here.
Keywords: reference; coverage; genome; wholeskim utilising ... See more keywords
Testing Efficacy of Assembly-Free and Alignment-Free Methods for Species Identification Using Genome Skims, with Patellogastropoda as a Test Case
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DOI: 10.3390/genes13071192
Abstract: Most recently, species identification has leaped from DNA barcoding into shotgun sequencing-based “genome skimming” alternatives. Genome skims have mainly been used to assemble organelle genomes, which discards much of the nuclear genome. Recently, an alternative… read more here.
Keywords: assembly free; species identification; genome skims; alignment free ... See more keywords