COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes
Sign Up to like & getrecommendations! Published in 2024 at "Nature Microbiology"
DOI: 10.1038/s41564-023-01598-2
Abstract: Viruses are often studied using metagenome-assembled sequences, but genome incompleteness hampers comprehensive and accurate analyses. Contig Overlap Based Re-Assembly (COBRA) resolves assembly breakpoints based on the de Bruijn graph and joins contigs. Here we benchmarked… read more here.
Keywords: viral genomes; improves completeness; contiguity; cobra improves ... See more keywords
Mitochondrial Genomes Assembled from Non-Invasive eDNA Metagenomic Scat Samples in Critically Endangered Mammals
Sign Up to like & getrecommendations! Published in 2023 at "Genes"
DOI: 10.3390/genes14030657
Abstract: The abundance of many large-bodied vertebrates, both in marine and terrestrial environments, has declined substantially due to global and regional climate stressors that define the Anthropocene. The development of genetic tools that can serve to… read more here.
Keywords: scat samples; edna samples; mitochondrial genomes; genomes assembled ... See more keywords