Genomic Epidemiology and Management of Salmonella in Island Ecosystems Used for Takahe Conservation
Sign Up to like & getrecommendations! Published in 2017 at "Microbial Ecology"
DOI: 10.1007/s00248-017-0959-1
Abstract: Translocation and isolation of threatened wildlife in new environments may have unforeseen consequences on pathogen transmission and evolution in host populations. Disease threats associated with intensive conservation management of wildlife remain speculative without gaining an… read more here.
Keywords: salmonella; genomic epidemiology; management; private island ... See more keywords
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
Sign Up to like & getrecommendations! Published in 2021 at "Nature Microbiology"
DOI: 10.1038/s41564-020-00838-z
Abstract: Coronavirus disease 2019 (COVID-19) was first diagnosed in Scotland on 1 March 2020. During the first month of the outbreak, 2,641 cases of COVID-19 led to 1,832 hospital admissions, 207 intensive care admissions and 126… read more here.
Keywords: scotland; genomic epidemiology; epidemiology; mainland europe ... See more keywords
Genomic epidemiology of clinical Campylobacter spp. at a single health trust site
Sign Up to like & getrecommendations! Published in 2018 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000227
Abstract: Campylobacter is the leading cause of bacterial enteritis in the developed world, and infections with the organism are largely sporadic in nature. Links between sporadic cases have not been established, with the majority of infections… read more here.
Keywords: genomic epidemiology; epidemiology clinical; epidemiology; campylobacter ... See more keywords
Genomic epidemiology and population structure of Neisseria gonorrhoeae in Norway, 2016–2017
Sign Up to like & getrecommendations! Published in 2020 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000359
Abstract: This study presents the nationwide epidemiology of Neisseria gonorrhoeae , using whole-genome sequencing of all culture-positive cases, which comprise roughly 40 % of all cases of gonorrhea reported in Norway from 2016 to 2017. Isolates were… read more here.
Keywords: norway 2016; 2016 2017; genomic epidemiology; epidemiology population ... See more keywords
Genomic epidemiology of tuberculosis in eastern Malaysia: insights for strengthening public health responses
Sign Up to like & getrecommendations! Published in 2021 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000573
Abstract: Tuberculosis is a leading public health priority in eastern Malaysia. Knowledge of the genomic epidemiology of tuberculosis can help tailor public health interventions. Our aims were to determine tuberculosis genomic epidemiology and characterize resistance mutations… read more here.
Keywords: lineage; genomic epidemiology; epidemiology; tuberculosis ... See more keywords
Streptococcus canis genomic epidemiology reveals the potential for zoonotic transfer
Sign Up to like & getrecommendations! Published in 2023 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000974
Abstract: Streptococcus canis , a multi-host pathogen commonly isolated from dogs and cats, has been occasionally reported in severe cases of human infection. To address the gap in knowledge on its virulence and host tropism, we… read more here.
Keywords: canis genomic; genomic epidemiology; streptococcus canis; epidemiology ... See more keywords
Genomic epidemiology of Staphylococcus aureus isolated from bloodstream infections in South America during 2019 supports regional surveillance.
Sign Up to like & getrecommendations! Published in 2023 at "Microbial genomics"
DOI: 10.1099/mgen.0.001020
Abstract: Staphylococcus aureus remains one of the leading causes of infections worldwide and a common cause of bacteraemia. However, studies documenting the epidemiology of S. aureus in South America using genomics are scarce. We hereby report… read more here.
Keywords: south america; staphylococcus aureus; genomic epidemiology; epidemiology ... See more keywords
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Sign Up to like & getrecommendations! Published in 2019 at "Genome research"
DOI: 10.1101/gr.241455.118
Abstract: The routine use of genomics for disease surveillance provides the opportunity for high-resolution bacterial epidemiology. Current whole-genome clustering and multilocus typing approaches do not fully exploit core and accessory genomic variation, and they cannot both… read more here.
Keywords: flexible bacterial; bacterial genomic; genomic epidemiology; epidemiology ... See more keywords
Response to comment on “Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2”
Sign Up to like & getrecommendations! Published in 2021 at "Science Translational Medicine"
DOI: 10.1126/scitranslmed.abj3222
Abstract: Description Further analysis of SARS-CoV-2 genome sequencing data identifies several highly recurrent genetic variants with low allele frequencies, which, if filtered out, provide estimates consistent with tighter transmission bottlenecks. Further analysis of SARS-CoV-2 genome sequencing… read more here.
Keywords: transmission; response comment; genomic epidemiology; comment genomic ... See more keywords
Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia
Sign Up to like & getrecommendations! Published in 2021 at "Antimicrobial Agents and Chemotherapy"
DOI: 10.1128/aac.01200-21
Abstract: Typhoid fever is an invasive bacterial disease of humans that disproportionately affects low- and middle-income countries. Antimicrobial resistance (AMR) has been increasingly prevalent in recent decades in Salmonella enterica serovar Typhi (S. ABSTRACT Typhoid fever… read more here.
Keywords: typhi; resistance; genomic epidemiology; antimicrobial resistance ... See more keywords
Genomic Epidemiology and Phylodynamic Analysis of Enterovirus A71 Reveal Its Transmission Dynamics in Asia
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.01958-22
Abstract: EV-A71 is one of the most important pathogens causing HFMD outbreaks; however, large-scale studies of EV-A71 genomic epidemiology are currently lacking. In this study, 200 new EV-A71 whole-genome sequences were determined. ABSTRACT Enterovirus A71 (EV-A71)… read more here.
Keywords: a71 whole; epidemiology; analysis; genomic epidemiology ... See more keywords