Genomic features of first bovine astrovirus detected in Egypt.
Sign Up to like & getrecommendations! Published in 2021 at "Virusdisease"
DOI: 10.1007/s13337-021-00668-5
Abstract: Bovine astrovirus (BAstV) is a small single-stranded RNA virus, which belongs taxonomically to genus Mamastrovirus under the family Astroviridae. The BAstV is strongly linked to neonatal diarrhea of calves. A few studies are available on… read more here.
Keywords: first bovine; bastv; bovine astrovirus; features first ... See more keywords
Genomic features, aroma profiles, and probiotic potential of the Debaryomyces hansenii species complex strains isolated from Korean soybean fermented food.
Sign Up to like & getrecommendations! Published in 2022 at "Food microbiology"
DOI: 10.1016/j.fm.2022.104011
Abstract: Fermented soybean products are gaining attention in the food industry owing to their nutritive value and health benefits. In this study, we performed genomic analysis and physiological characterization of two Debaryomyces spp. yeast isolates obtained… read more here.
Keywords: c11; food; genomic features; debaryomyces hansenii ... See more keywords
Genomic features of a highly virulent, ceftiofur-resistant, CTX-M-8-producing Escherichia coli ST224 causing fatal infection in a domestic cat.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of global antimicrobial resistance"
DOI: 10.1016/j.jgar.2018.10.023
Abstract: OBJECTIVES Escherichia coli strains producing extended-spectrum β-lactamases (ESBLs), especially CTX-M-type, have been largely described in companion animals; however, genomic data are lacking to clarify the clinical impact of ESBL-producing isolates in these hosts. The aim… read more here.
Keywords: ctx producing; escherichia coli; highly virulent; ctx ... See more keywords
Emerging bacterial fish pathogen Lactococcus garvieae RTCLI04, isolated from rainbow trout (Oncorhynchus mykiss): Genomic features and comparative genomics.
Sign Up to like & getrecommendations! Published in 2020 at "Microbial pathogenesis"
DOI: 10.1016/j.micpath.2020.104368
Abstract: Lactococcus garvieae is one of the emerging zoonotic bacterial pathogen, causes fatal hemorrhagic septicemia in cultured fish species, animals and humans, worldwide. Here, we report the genomic features of whole-genome sequence (WGS) of L. garvieae… read more here.
Keywords: lactococcus garvieae; garvieae; genomic features; garvieae rtcli04 ... See more keywords
Machine learning of genomic features in organotropic metastases stratifies progression risk of primary tumors.
Sign Up to like & getrecommendations! Published in 2021 at "Nature communications"
DOI: 10.1038/s41467-021-27017-w
Abstract: Metastatic cancer is associated with poor patient prognosis but its spatiotemporal behavior remains unpredictable at early stage. Here we develop MetaNet, a computational framework that integrates clinical and sequencing data from 32,176 primary and metastatic… read more here.
Keywords: risk; machine learning; learning genomic; primary tumors ... See more keywords
Genomic features, phylogenetic relationships, and comparative genomics of Elizabethkingia anophelis strain EM361-97 isolated in Taiwan
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/s41598-017-14841-8
Abstract: Elizabethkingia anophelis has become an emerging infection in humans. Recent research has shown that previous reports of E. meningoseptica infections might in fact be caused by E. anophelis. We aimed to investigate the genomic features,… read more here.
Keywords: comparative genomics; elizabethkingia anophelis; relationships comparative; phylogenetic relationships ... See more keywords
PRAWNS: compact pan-genomic features for whole-genome population genomics
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac844
Abstract: Abstract Motivation Scientists seeking to understand the genomic basis of bacterial phenotypes, such as antibiotic resistance, today have access to an unprecedented number of complete and nearly complete genomes. Making sense of these data requires… read more here.
Keywords: pan genomic; genomic features; whole genome; prawns compact ... See more keywords
Genomic features of meiotic crossovers in diploid potato
Sign Up to like & getrecommendations! Published in 2023 at "Horticulture Research"
DOI: 10.1093/hr/uhad079
Abstract: Meiotic recombination plays an important role in genome evolution and crop improvement. Potato (Solanum tuberosum L.) is the most important tuber crop in the world, but research about meiotic recombination in potato is limited. Here,… read more here.
Keywords: diploid potato; potato; density; features meiotic ... See more keywords
Surveying mutation density patterns around specific genomic features
Sign Up to like & getrecommendations! Published in 2022 at "Genome Research"
DOI: 10.1101/gr.276770.122
Abstract: Mutation density patterns reveal unique biological properties of specific genomic regions and shed light on the mechanisms of carcinogenesis. Although previous studies reported insightful mutation density patterns associated with certain genomic regions such as transcription… read more here.
Keywords: mutation density; patterns around; density patterns; genomic features ... See more keywords
Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features
Sign Up to like & getrecommendations! Published in 2023 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.04645-22
Abstract: In this study, we proposed a novel plasmid prediction tool named Plasmer. Technically, unlike existing k-mer or genomic features-based methods, Plasmer is the first tool to combine the advantages of the percent of shared k-mers… read more here.
Keywords: tool; plasmid prediction; genomic features; shared mers ... See more keywords
Aggressive genomic features in clinically indolent primary HHV8-negative effusion-based lymphoma.
Sign Up to like & getrecommendations! Published in 2019 at "Blood"
DOI: 10.1182/blood-2017-12-822171
Abstract: TO THE EDITOR: In rare instances, malignant lymphomas present as a body cavity–based effusion, without an identifiable tumor mass. Most frequently, this concerns primary effusion lymphoma (PEL), a human herpes virus-8 (HHV8)-positive B-cell lymphoma that… read more here.
Keywords: clinically indolent; hhv8; features clinically; aggressive genomic ... See more keywords