Genomic prediction for broad and specific adaptation in sorghum accommodating differential variances of SNP effects
Sign Up to like & getrecommendations! Published in 2020 at "Crop Science"
DOI: 10.1002/csc2.20221
Abstract: This paper reports a first study exploring genomic prediction for adaptation of sorghum [Sorghum bicolor (L.) Moench] to drought-stress (D-ET) and nonstress (W-ET) environment types. The objective was to evaluate the impact of both modeling… read more here.
Keywords: adaptation sorghum; specific adaptation; genomic prediction; prediction ... See more keywords
Integration of Crop Growth Models and Genomic Prediction.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-2205-6_13
Abstract: Crop growth models (CGMs) consist of multiple equations that represent physiological processes of plants and simulate crop growth dynamically given environmental inputs. Because parameters of CGMs are often genotype-specific, gene effects can be related to… read more here.
Keywords: crop; genomic prediction; crop growth; growth models ... See more keywords
Genomic Prediction of Complex Traits in Perennial Plants: A Case for Forest Trees.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-2205-6_18
Abstract: This chapter provides an overview of the genomic selection progress in long-lived forest tree species. Factors affecting the prediction accuracy in genomic prediction are assessed with examples from empirical studies. Infrastructure and resources required for… read more here.
Keywords: genomic prediction; prediction complex; traits perennial; prediction ... See more keywords
Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-2205-6_19
Abstract: The majority of forage grass species are obligate outbreeders. Their breeding classically consists of an initial selection on spaced plants for highly heritable traits such as disease resistances and heading date, followed by familial selection… read more here.
Keywords: genomic prediction; prediction complex; forage; species perennial ... See more keywords
Genomic Prediction of Complex Traits in an Allogamous Annual Crop: The Case of Maize Single-Cross Hybrids.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-2205-6_20
Abstract: For many plant and animal species, commercial products are hybrids between individuals from different genetic groups. For allogamous plant species such as maize, the breeding objective is to produce single-cross hybrid varieties from two inbred… read more here.
Keywords: maize breeding; single cross; genomic prediction; cross ... See more keywords
Genomic Prediction Methods Accounting for Nonadditive Genetic Effects.
Sign Up to like & getrecommendations! Published in 2022 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-2205-6_8
Abstract: The use of genomic information for prediction of future phenotypes or breeding values for the candidates to selection has become a standard over the last decade. However, most procedures for genomic prediction only consider the… read more here.
Keywords: genomic prediction; prediction methods; nonadditive genetic; methods accounting ... See more keywords
Extension of a haplotype-based genomic prediction model to manage multi-environment wheat data using environmental covariates
Sign Up to like & getrecommendations! Published in 2019 at "Theoretical and Applied Genetics"
DOI: 10.1007/s00122-019-03413-1
Abstract: A multi-environment genomic prediction model incorporating environmental covariates increased the prediction accuracy of wheat grain protein content. The advantage of the haplotype-based model was dependent upon the trait of interest. The inclusion of environment covariates… read more here.
Keywords: genomic prediction; model; haplotype based; environment ... See more keywords
Genomic prediction with multiple biparental families
Sign Up to like & getrecommendations! Published in 2019 at "Theoretical and Applied Genetics"
DOI: 10.1007/s00122-019-03445-7
Abstract: Key message For genomic prediction within biparental families using multiple biparental families, combined training sets comprising full-sibs from the same family and half-sib families are recommended to reach high and robust prediction accuracy, whereas inclusion… read more here.
Keywords: genomic prediction; multiple biparental; unrelated families; biparental families ... See more keywords
CV-α: designing validations sets to increase the precision and enable multiple comparison tests in genomic prediction
Sign Up to like & getrecommendations! Published in 2021 at "Euphytica"
DOI: 10.1007/s10681-021-02831-x
Abstract: Usually, the comparison among genomic prediction models is based on validation schemes as Repeated Random Subsampling (RRS) or K-fold cross-validation. Nevertheless, the design of training and validation sets has a high effect on the way… read more here.
Keywords: comparison; genomic prediction; methodology; validation ... See more keywords
Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery
Sign Up to like & getrecommendations! Published in 2017 at "Nature Genetics"
DOI: 10.1038/ng.3920
Abstract: The rate of annual yield increases for major staple crops must more than double relative to current levels in order to feed a predicted global population of 9 billion by 2050. Controlled hybridization and selective… read more here.
Keywords: genomic prediction; plant; breeding; biological discovery ... See more keywords
Genomic prediction of cognitive traits in childhood and adolescence
Sign Up to like & getrecommendations! Published in 2019 at "Molecular Psychiatry"
DOI: 10.1038/s41380-019-0394-4
Abstract: Recent advances in genomics are producing powerful DNA predictors of complex traits, especially cognitive abilities. Here, we leveraged summary statistics from the most recent genome-wide association studies of intelligence and educational attainment, with highly genetically… read more here.
Keywords: genomic prediction; prediction cognitive; cognitive traits; polygenic score ... See more keywords