A genome screen for the development of sex-specific DNA markers in Saccharina japonica
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Applied Phycology"
DOI: 10.1007/s10811-017-1295-z
Abstract: Saccharina japonica is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and farming. However, there are limited credible and effective sex markers to identify… read more here.
Keywords: genome screen; saccharina japonica; sex; japonica ... See more keywords
Species-specific genomic sequences for classification of bacteria
Sign Up to like & getrecommendations! Published in 2020 at "Computers in biology and medicine"
DOI: 10.1016/j.compbiomed.2020.103874
Abstract: Modern bacterial classification relies on genomic relatedness. Genetic variation in bacterial populations present a big challenge for taxonomic classification and recently several bacterial species have been reclassified based on the intra-species genome comparison. These were… read more here.
Keywords: bacterial species; classification; specific genomic; genome comparison ... See more keywords
HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences
Sign Up to like & getrecommendations! Published in 2022 at "GigaScience"
DOI: 10.1093/gigascience/giac038
Abstract: Abstract Background In diploid organisms, whole-genome haplotype assembly relies on the accurate identification and assignment of heterozygous single-nucleotide polymorphism alleles to the correct homologous chromosomes. This appropriate phasing of these alleles ensures that combinations of… read more here.
Keywords: based haplotype; genomic sequences; haplomaker; haplotype assembly ... See more keywords
Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences.
Sign Up to like & getrecommendations! Published in 2023 at "Systematic biology"
DOI: 10.1093/sysbio/syad009
Abstract: Phylogenetic analysis of polyploid hybrid species has long posed a formidable challenge as it requires the ability to distinguish between alleles of different ancestral origins in order to disentangle their individual evolutionary history. This problem… read more here.
Keywords: genomic sequences; parental species; sequence; analysis ... See more keywords
Zucchini yellow mosaic virus Genomic Sequences from Papua New Guinea: Lack of Genetic Connectivity with Northern Australian or East Timorese Genomes, and New Recombination Findings.
Sign Up to like & getrecommendations! Published in 2019 at "Plant disease"
DOI: 10.1094/pdis-09-18-1666-re
Abstract: Zucchini yellow mosaic virus (ZYMV) isolates were obtained in Papua New Guinea (PNG) from cucumber (Cucumis sativus) or pumpkin (Cucurbita spp.) plants showing mosaic symptoms growing at Kongop in the Mount Hagen District, Western Highlands… read more here.
Keywords: phylogroup; genetic connectivity; genomic sequences; major phylogroup ... See more keywords
HADC: A Hybrid Compression Approach for DNA Sequences
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Access"
DOI: 10.1109/access.2022.3212523
Abstract: In the blossoming age of Next Generation Sequencing (NGS) technologies, genome sequencing has become much easier and more affordable. The large number of enormous genomic sequences obtained demand the availability of huge storage space in… read more here.
Keywords: genomic sequences; dna sequences; hybrid compression; hadc hybrid ... See more keywords
Monitoring viral genomic sequences in transfusion-transmitted viruses.
Sign Up to like & getrecommendations! Published in 2023 at "Vox sanguinis"
DOI: 10.1111/vox.13444
Abstract: BACKGROUND AND OBJECTIVES Monitoring genomic sequences of blood-borne viruses infecting blood donors enables blood operators to undertake molecular epidemiology, confirm transfusion transmission and assess and characterize molecular and serological screening assays. The purpose of the… read more here.
Keywords: transfusion transmitted; genomic sequences; transfusion; blood operators ... See more keywords
Analysis of Recombinant Characteristics Based on 949 PRRSV-2 Genomic Sequences Obtained from 1991 to 2021 Shows That Viral Multiplication Ability Contributes to Dominant Recombination
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.02934-22
Abstract: Recombination is an important driver of the genetic shifts that are tightly linked to the evolution of RNA viruses. Viral recombination contributes substantially to the emergence of new variants, alterations in virulence, and pathogenesis. ABSTRACT… read more here.
Keywords: prrsv; genomic sequences; recombination; recombinant ... See more keywords
Interpretive time-frequency analysis of genomic sequences
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1524-0
Abstract: BackgroundTime-Frequency (TF) analysis has been extensively used for the analysis of non-stationary numeric signals in the past decade. At the same time, recent studies have statistically confirmed the non-stationarity of genomic non-numeric sequences and suggested… read more here.
Keywords: frequency analysis; analysis; interpretive time; genomic sequences ... See more keywords
Molecular Characterization of QX-Like and Variant Infectious Bronchitis Virus Strains in Malaysia Based on Partial Genomic Sequences Comprising the S-3a/3b-E-M-Intergenic Region-5a/5b-N Gene Order
Sign Up to like & getrecommendations! Published in 2017 at "Avian Diseases"
DOI: 10.1637/11637-032817-reg.1
Abstract: SUMMARY Infectious bronchitis virus (IBV) is one of the major poultry pathogens of global importance. However, the prevalence of IBV strains in Malaysia is poorly characterized. The partial genomic sequences (6.8 kb) comprising the S-3a/3b-E-M-intergenic… read more here.
Keywords: partial genomic; bronchitis virus; strains malaysia; strain ... See more keywords