VSS: Variance-stabilized signals for sequencing-based genomic signals.
Sign Up to like & getrecommendations! Published in 2021 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btab457
Abstract: MOTIVATION A sequencing-based genomic assay such as ChIP-seq outputs a real-valued signal for each position in the genome that measures the strength of activity at that position. Most genomic signals lack the property of variance… read more here.
Keywords: stabilized signals; variance stabilized; genomic signals; variance ... See more keywords
SigTools: Exploratory Visualization For Genomic Signals.
Sign Up to like & getrecommendations! Published in 2021 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btab742
Abstract: MOTIVATION With the advancement of sequencing technologies, genomic data sets are constantly being expanded by high volumes of different data types. One recently introduced data type in genomic science is genomic signals, which are usually… read more here.
Keywords: visualization; sigtools exploratory; genomic signals; exploratory visualization ... See more keywords
DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac454
Abstract: MOTIVATION Accurate annotation of different genomic signals and regions (GSRs) from DNA sequences is fundamentally important for understanding gene structure, regulation, and function. Numerous efforts have been made to develop machine learning-based predictors for in… read more here.
Keywords: general deep; signals regions; genomic signals; deep learning ... See more keywords