Genotyping‐by‐sequencing analysis of Orobanche crenata populations in Algeria reveals genetic differentiation
Sign Up to like & getrecommendations! Published in 2022 at "Ecology and Evolution"
DOI: 10.1002/ece3.8750
Abstract: Abstract Crenate broomrape (Orobanche crenata Forsk.) is a serious long‐standing parasitic weed problem in Algeria, mainly affecting legumes but also vegetable crops. Unresolved questions for parasitic weeds revolve around the extent to which these plants… read more here.
Keywords: analysis; orobanche crenata; crenata; genotyping sequencing ... See more keywords
Methods for Genotyping-by-Sequencing.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-6442-0_16
Abstract: A major goal for biologists is to understand the connection between genes and phenotypic traits, and genetic mapping in experimental populations remains a powerful approach for discovering the causal genes underlying phenotypes. For genetic mapping,… read more here.
Keywords: methods genotyping; biology; genotyping sequencing; genetic mapping ... See more keywords
Genotyping-by-sequencing reveals the effects of riverscape, climate and interspecific introgression on the genetic diversity and local adaptation of the endangered Mexican golden trout (Oncorhynchus chrysogaster)
Sign Up to like & getrecommendations! Published in 2020 at "Conservation Genetics"
DOI: 10.1007/s10592-020-01297-z
Abstract: How environmental and anthropogenic factors influence genetic variation and local adaptation is a central issue in evolutionary biology. The Mexican golden trout (Oncorhynchus chrysogaster), one of the southernmost native salmonid species in the world, is… read more here.
Keywords: trout; local adaptation; genetic diversity; genotyping sequencing ... See more keywords
Development of a massively parallel, genotyping-by-sequencing assay in American badger (Taxidea taxus) highlights the need for careful validation when working with low template DNA
Sign Up to like & getrecommendations! Published in 2020 at "Conservation Genetics Resources"
DOI: 10.1007/s12686-020-01146-8
Abstract: Non-invasive DNA sampling to identify and enumerate species is critical to population monitoring and for developing effective management strategies. However, individual DNA identification is often limited by degraded and low template DNA (LT-DNA) that routinely… read more here.
Keywords: parallel genotyping; dna; massively parallel; low template ... See more keywords
Single nucleotide polymorphism (SNP) discovery through genotyping-by-sequencing (GBS) and genetic characterization of Dendrobium mutants and cultivars
Sign Up to like & getrecommendations! Published in 2019 at "Scientia Horticulturae"
DOI: 10.1016/j.scienta.2018.09.053
Abstract: Abstract Dendrobium plants are the most important orchids used in horticultural industries and oriental medicine. Recently, several Dendrobium mutant genotypes with improved horticultural traits have been developed using various mutagens such as gamma irradiation, somaclonal… read more here.
Keywords: nucleotide polymorphism; single nucleotide; dendrobium; genotyping sequencing ... See more keywords
Optimizing imputation of marker data from genotyping-by-sequencing (GBS) for genomic selection in non-model species: Rubber tree (Hevea brasiliensis) as a case study.
Sign Up to like & getrecommendations! Published in 2021 at "Genomics"
DOI: 10.1016/j.ygeno.2021.01.012
Abstract: Genotyping-by-sequencing (GBS) provides the marker density required for genomic predictions (GP). However, GBS gives a high proportion of missing SNP data which, for species without a chromosome-level genome assembly, must be imputed without knowing the… read more here.
Keywords: imputation; genotyping sequencing; rubber tree; sequencing gbs ... See more keywords
Intra- and interspecific diversity analyses in the genus Eremurus in Iran using genotyping-by-sequencing reveal geographic population structure
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture Research"
DOI: 10.1038/s41438-020-0265-9
Abstract: Eremurus species, better known as ‘Foxtail Lily’ or ‘Desert Candle’, are important worldwide in landscaping and the cut-flower industry. One of the centers of highest diversity of the genus Eremurus is Iran, which has seven… read more here.
Keywords: eremurus iran; diversity; genus eremurus; population structure ... See more keywords
High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Reports"
DOI: 10.1038/s41598-019-48257-3
Abstract: As a step towards trait mapping in the halophyte seashore paspalum (Paspalum vaginatum Sw.), we developed an F1 mapping population from a cross between two genetically diverse and heterozygous accessions, 509022 and HI33. Progeny were… read more here.
Keywords: high density; maps seashore; genetic maps; seashore paspalum ... See more keywords
Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/srep46112
Abstract: Colossoma macropomum, or tambaqui, is the largest native Characiform species found in the Amazon and Orinoco river basins, yet few resources for genetic studies and the genetic improvement of tambaqui exist. In this study, we… read more here.
Keywords: map; linkage; colossoma macropomum; genetic map ... See more keywords
Genotyping-by-Sequencing for Analysis of the Genetic Variation of Podosphaera xanthii, Incitant of Cucurbit Powdery Mildew.
Sign Up to like & getrecommendations! Published in 2019 at "Plant disease"
DOI: 10.1094/pdis-03-19-0513-re
Abstract: This research was conducted to identify species causing powdery mildew on cucurbits and to determine genetic variations among isolates of the pathogen. We collected 109 isolates from six cucurbit species hosts (Cucumis melo, Cucumis sativus,… read more here.
Keywords: powdery; cucurbit; powdery mildew; genotyping sequencing ... See more keywords
Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations
Sign Up to like & getrecommendations! Published in 2017 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.12613
Abstract: Whole‐genome duplications have occurred in the recent ancestors of many plants, fish, and amphibians, resulting in a pervasiveness of paralogous loci and the potential for both disomic and tetrasomic inheritance in the same genome. Paralogs… read more here.
Keywords: whole genome; natural populations; genotyping sequencing; read ratios ... See more keywords